Strain | Pseudomonas putida S13.1.2, complete genome. [Details] | |
DNA Sequence Upstream of Gene |
GCCAGATGAACTTCGTCGACAACCAGGTCAACCCGCGCACCGGCACCATCCGTGGTCGTGCGGTGTTCGACAACCGCGACGGCCAGTTCACCCCAGGCCT GTACGCACGCCTGAAGCTGGTCGGCAGCGCCCAGTACGACGCCGTGCTGATCAACGACGAAGCTGTGGGCACCGACCTTGGCAAGAAGTTCGTGCTGGTC ATGGACAAGGACAACAAGGCCGCCTACCGCGCCGTGGAGCTGGGGCCGAAGCTGGAAGGCCTGCGCATCGTGCGCAGCGGCCTGGGCAAGGACGACCGCA TCGTGGTCAAGGGCCTGCAGCGCGTGCGCCCTGGCTCGCCGGTCACCCCGGAAGAAACCCCAATGGCCAGCGAACAGACCCTCGCCGCCCTCGCCCAGCA ACGCCAGGCACTGGAGGCCAGCAATCCGGCGCCCAAGGTGGCGGGCAACAATGTGAAAGTCGCCAGCGCCCAGGCGCCACGCGGTTAAGGGAACATACCG
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DNA Sequence for Gene |
>N805_RS06640
ATGAACTTCTCGAAATTCTTCATTACCCGGCCGATTTTCGCCGCGGTGCTGTCGCTGGTGCTGCTGATTGCGGGTTCGATCTCGCTGTTCCAGCTGCCGA TCAGCGAATACCCCGAAGTGGTGCCACCCACCGTGGTGGTGCGTGCCAACTTCCCCGGCGCCAACCCCAAGGTTATCGGCGAAACCGTCGCCGCGCCGCT GGAGCAGGCCATTACCGGTGTGGAGAACATGCTGTACATGTCTTCCCAGTCCACCGCTGACGGCAAGCTGACGCTGACCATCACGTTCGCCCTGGGCACT GACCTGGACAACGCCCAGGTGCAGGTGCAGAACCGCGTTACCCGTACCCAGCCCAAGCTGCCCGAGGAAGTGACGCGTATCGGTATTACCGTCGACAAGG CCTCGCCCGACCTGACCATGGTCGTGCACCTGACCTCGCCGGACAACCGCTACGACATGCTCTACCTGTCCAACTACGCCATCCTCAACATCAAGGACGA GCTGGCGCGCCTGGGCGGCATCGGCGATGTTCAACTGTTCGGTATGGGCGACTACTCGCTGCGCGTGTGGCTGGACCCGAACAAGACCGCTTCGCGCAAC CTCACCGCCAGTGATGTGGTTGCGGCCATCCGCGAGCAGAACCGCCAGGTGGCCGCCGGCCAGCTGGGCGCCCCGCCCGCCCCGGGCTCCACCAGCTTCC AGCTGTCGATCAACACCCAGGGCCGTCTGGTCAACGAGGAAGAGTTCGAGAACATCATCATCCGTGCCGGTGCCGATGGCGAAATCACGCGCCTGAAGGA CATCGCCCGGGTCGAACTCGGCTCCAGCCAGTACGCCTTGCGCTCGCTGCTGAACAACCAGCCAGCGGTGGCCATCCCGATCTTCCAGCGCCCAGGCTCC AACGCCATCGAAATCTCCGACGAAGTGCGGGCGAAAATGGCCGAGCTGAAGAAGGACTTCCCTGAAGGGATGGACTACAGCATCGTCTATGACCCGACCA TCTTCGTGCGCGGCTCCATCGAAGCAGTGGTGCACACCCTGTTCGAAGCCCTGGTGCTGGTCGTGCTGGTGGTCATCCTGTTCCTGCAGACCTGGCGTGC CTCGATCATCCCGCTGCTGGCCGTGCCGGTATCGTTGATCGGTACCTTTGCAGTGATGCACCTGTTCGGCTTCTCGCTCAACGCCTTGTCGCTGTTCGGC TTGGTGCTGGCCATCGGCATTGTGGTGGACGACGCCATCGTCGTGGTGGAAAACGTCGAGCGCAATATAGGGCTGGGCCTGAAACCGCTGGAAGCCACGC AAAAGGCCATGAGCGAAGTGACCGGGCCGATCATTGCCACCGCCCTGGTGCTGTGCGCCGTGTTCGTACCTGCGGCGTTCATTTCCGGCCTTACCGGGCA GTTCTACAAGCAGTTCGCCCTGACCATCGCCATTTCCACCGTGATCTCGGCGTTCAACTCGCTGACCCTGTCGCCGGCCCTGGCTGCCGTGCTGCTGAAG GAACACCATGCGCCCAAGGACCGTTTCTCGCGGTTGCTCGACAAGCTGCTGGGCAGCTGGCTGTTCTCGCCGTTCAACCGTTTCTTCGACCGCGCCAGCC ACAGCTACGTCGGTGGCGTGCGCCGGGTCATCCGCTCCAGCGGCATCGCCCTGTTCGTCTATGCCGGCCTGATGGGCCTGACCTACCTGGGCTTCTCGTC CACGCCGACCGGCTTCGTGCCAGCCCAGGACAAGCAGTACCTGGTGGCCTTCGCCCAACTGCCGGACGCGGCCAGCCTCGACCGTACCGAGGCGGTGATC AAAAGAATGAGCGAGGCGGCCCTCAAGCAACCAGGTGTTGCCGACTCCATCGCCTTCCCTGGCCTGTCGATCAACGGTTTCACAAACAGCCCGAACAGCG GCATTGTGTTCGTCTCGCTCAAATCGTTCGATGAGCGCAAGGACCCAAGCCAGTCGGCGGCCGCTATTGCCGCCACGCTGAATGCCCAGTTCGCCGACAT CCAGGAAGCCTACATCGCAATCTTCCCCCCGCCGCCCGTACAGGGCCTGGGCACAATCGGCGGCTTCCGCCTGCAAATCGAAGACCGTGGCAACCTGGGT TACGAAGCGCTGTACAAGGAAACCCAGAACATCATCGCCAAGAGCCACAACGTGCCGGAGCTGGCAGGCCTGTTCACCAGCTACCAGGTCAATGTGCCGC AGGTCGATGCCGCCATCGACCGGGAAAAGGCCAAGACCCACGGCGTGGCGATCAACGATATCTTCGACACCTTGCAGGTTTACCTGGGCTCGCTGTACAC CAACGACTTCAACCGCTTTGGCCGCACCTACCAGGTCAACGTCCAGGCTGAGCAGCAGTTCCGCCTCGATGCCGAGCAGATCGGCCAGTTGAAGGTGCGC AACAACCTGGGCGAGATGATCCCGCTGGCGACCTTCCTCAAGGTCAGCGACACCTCCGGGCCGGACCGCGTGATGCACTACAACGGCTTTATCACCGCAG AAATCAACGGTGCAGCAGCCCCGGGCTACAGCTCTGGCCAGGCCGAAGCTGCCATCGAGAAGCTGCTGAAAGAAGAACTGCCCAACGGCATGACCTTCGA GTGGACCGACCTGACCTACCAGCAGATCCTCTCGGGCAACACCGCACTGCTGGTCTTCCCGCTGTGCGTGCTGCTGGCGTTCCTGGTGCTGGCCGCCCAG TACGAAAGCTGGAGCCTGCCGTTGGCGGTGATCCTGATCGTACCGATGACCCTGCTGTCGGCCATTACCGGTGTGATCGTGTCGGGTGGCGACAACAACA TCTTCACCCAGATCGGCCTGATCGTGCTGGTGGGCCTGGCGTGCAAGAACGCGATCCTGATCGTGGAATTCGCCAAGGATGAACAGGCCAAAGGCCTGGA TCCGCTGGCTGCTGTACTGGAAGCCTGCCGCCTGCGCCTGCGGCCGATCCTGATGACTTCGATTGCCTTCATCATGGGTGTGGTGCCGCTGGTGTTCAGC TCTGGTGCAGGTTCGGAAATGCGCCATGCCATGGGTGTGGCGGTGTTCTCGGGGATGATCGGCGTGACCGTGTTCGGCCTGTTCCTGACCCCGGTGTTCT TCTTCCTGATCCGCCGTTTCGTCGAGCGTCGCCAGGCCCGCAAGGCCGAGCGCGTTCAAGTGCTGGAGAACCATGCATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
ACCTGCTCAAACCCCTCACCCCAAGCCTGCTGGCACTGGCCCTGGCAGCCTGTGCGGTAGGCCCGGACTACCAGGCCCCGGCAACCGAACCTGCACAACT GAGCAGCGATGTGCAGGCCAAGGCCTACGACCGTAGCCGCTTCGAAAGCCTGTGGTGGAAGCAGTTCGACGACCCGGTGTTGAACCAGCTGGTGCAGGCT TCGCTGGACGGCAACCGTGACTTGCGCGTGGCCTTCGCCCGCCTGAAATCCGCCCGTTCCATCCGCGAAGACGCCGAAAACGACCAGTTCCCGGTGGTCA CCAGCGGCGCCAGCAGCGAGATCGGCAAGGGCCAGATCCCCGGCCAGACCACGCAGCGGGTGAACAGCGAGCGCTATGACCTGGGCCTGGACATGGCCTG GGAGCTTGACCTGTTCGGGCGCATCCAGCGCCAGATCGAGGCCAGCGAAGCCCAGGAAGCGGTAGCCGCCGCCGACCTGCAACAGTTGCAGGTCAGCCTG
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Amino Acid Sequence |
>multidrug efflux RND transporter permease subunit
MNFSKFFITRPIFAAVLSLVLLIAGSISLFQLPISEYPEVVPPTVVVRANFPGANPKVIGETVAAPLEQAITGVENMLYMSSQSTADGKLTLTITFALGT DLDNAQVQVQNRVTRTQPKLPEEVTRIGITVDKASPDLTMVVHLTSPDNRYDMLYLSNYAILNIKDELARLGGIGDVQLFGMGDYSLRVWLDPNKTASRN LTASDVVAAIREQNRQVAAGQLGAPPAPGSTSFQLSINTQGRLVNEEEFENIIIRAGADGEITRLKDIARVELGSSQYALRSLLNNQPAVAIPIFQRPGS NAIEISDEVRAKMAELKKDFPEGMDYSIVYDPTIFVRGSIEAVVHTLFEALVLVVLVVILFLQTWRASIIPLLAVPVSLIGTFAVMHLFGFSLNALSLFG LVLAIGIVVDDAIVVVENVERNIGLGLKPLEATQKAMSEVTGPIIATALVLCAVFVPAAFISGLTGQFYKQFALTIAISTVISAFNSLTLSPALAAVLLK EHHAPKDRFSRLLDKLLGSWLFSPFNRFFDRASHSYVGGVRRVIRSSGIALFVYAGLMGLTYLGFSSTPTGFVPAQDKQYLVAFAQLPDAASLDRTEAVI KRMSEAALKQPGVADSIAFPGLSINGFTNSPNSGIVFVSLKSFDERKDPSQSAAAIAATLNAQFADIQEAYIAIFPPPPVQGLGTIGGFRLQIEDRGNLG YEALYKETQNIIAKSHNVPELAGLFTSYQVNVPQVDAAIDREKAKTHGVAINDIFDTLQVYLGSLYTNDFNRFGRTYQVNVQAEQQFRLDAEQIGQLKVR NNLGEMIPLATFLKVSDTSGPDRVMHYNGFITAEINGAAAPGYSSGQAEAAIEKLLKEELPNGMTFEWTDLTYQQILSGNTALLVFPLCVLLAFLVLAAQ YESWSLPLAVILIVPMTLLSAITGVIVSGGDNNIFTQIGLIVLVGLACKNAILIVEFAKDEQAKGLDPLAAVLEACRLRLRPILMTSIAFIMGVVPLVFS SGAGSEMRHAMGVAVFSGMIGVTVFGLFLTPVFFFLIRRFVERRQARKAERVQVLENHA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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