Pseudomonas putida S13.1.2, N805_RS00715 (fliA)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida S13.1.2, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TTCAGTGAAGTGGGTGACAACCTCGACGTACTGGTGATCGACACTGCGGCGGGGATTGGTGAGTCGGTGGTCAGCTTCGTTCGCGCCGCCCAGGAAGTCC TGCTGGTGGTCTGCGACGAGCCCACCTCGATCACCGATGCCTACGCCCTGATCAAACTGCTCAACCGCGACTACGGGATGAATCGTTTCCGCGTGCTGGC CAACATGGCGCAAAGCCCGCAGGAAGGGCGCAACCTGTTCGCCAAGCTGACCAAGGTCACCGACCGCTTCCTCGACGTGGCCCTGCAGTACGTGGGCGCG GTGCCGTACGACGAGTGTGTGCGCAAGGCGGTGCAGAAGCAGCGCGCCGTCTACGAAGCCTTCCCGCGTTCCAAGTGCGCGCTGGCCTTCAAGGCGATTG CCCAGAAGGTTGACAGCTGGCCGCTGCCAGCCAATCCGCGCGGCCACCTGGAATTCTTTGTCGAGCGCCTGGTGCAACCCACCAGCGCGGGACCCGTGCT
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| DNA Sequence for Gene |
>N805_RS00715
|fliA
ATGAATGCCAGCGGCTTCAAGATGTACAGCCGGGCAGCGAAAGACGCCCAGTACGAGCTGATCGAACGCTACGCCCCGCTGGTCAAGCGCATTGCCTACC ACCTGTTGGCGCGGTTGCCGGCCAACGTGCAGGTCGAGGACCTGATCCAGGCCGGCATGATCGGCCTGCTTGAAGTGGCCAACAAGTATGACGCCAGCAA AGGCGCCAGCTTTGAAACCTATGCCGGCATCCGCATCCGCGGGGCCATGCTGGACGAGGTGCGCAAGGGCGACTGGGCACCGCGTTCGGTGCACCGCAAC ACCCGCATGGTCAGTGACGCGATGCGTGCCGTTGAAGCCAGAACCGGCCGAGACGCTAAAGATCATGAAGTTGCTGCCGAACTCCAATTGAGTCTCGATG ATTACTACGGGATCTTGAACGATACCCTGGGCAGCCGCCTGTTCAGCTTTGACGACCTGTTGCAGGACGGCGAGCACGAAGGGCTGCACGAGGACGGCGC CAGTGGCCATGTCGAACCTGCGCGTGGCCTGGAGGACGAGCGCTTCCAGGCTGCCCTGACCGAGGCCATTGCCAACCTGCCGGAGCGTGAGCGCCTGGTG CTGGCGCTGTACTACGACGAAGAGCTGAACCTCAAGGAAATCGGCGAGGTGCTTGGGGTCAGCGAGTCGCGGGTCAGCCAGCTGCACAGCCAGTGTGCCG CTCGGTTGCGCAGCCGCCTGGGGGAATGGCGGGCACGTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCCGGTGTCGTTGCAGTCGTTTTCCACGTGCTTTTTCCACGTTGTACCGAATTGAATGAGTGCGTGCCCGGTCGGCCGGGCGCGTTTGAGACTGCTTGG AGGTCTAATTGGACAAGAACATGAAAATCCTCATCGTTGACGACTTTTCGACGATGCGGCGGATCATCAAGAACCTGTTGCGTGACCTGGGCTTCACCAA CACCGAAGAAGCCGACGATGGCACCACGGCGCTGCCGATGCTGCAAAGGGGCGCCTACGACTTCCTGGTAACCGACTGGAACATGCCCGGCATGTCCGGC ATCGACTTGCTGCGCAAAGTGCGTGCCGACGAGCAACTGAAGCACTTGCCTGTGCTTATGGTGACCGCTGAGGCCAAGCGCGACCAGATCATCGAAGCGG CCCAGGCCGGCGTCAATGGCTATGTCGTCAAGCCGTTCACCGCCCAGGTGCTCAAAGAAAAGATCGAGAAGATCTTCGAACGCGTCAACGGCTGAGTCAC
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| Amino Acid Sequence |
>DNA-directed RNA polymerase sigma-70 factor
MNASGFKMYSRAAKDAQYELIERYAPLVKRIAYHLLARLPANVQVEDLIQAGMIGLLEVANKYDASKGASFETYAGIRIRGAMLDEVRKGDWAPRSVHRN TRMVSDAMRAVEARTGRDAKDHEVAAELQLSLDDYYGILNDTLGSRLFSFDDLLQDGEHEGLHEDGASGHVEPARGLEDERFQAALTEAIANLPERERLV LALYYDEELNLKEIGEVLGVSESRVSQLHSQCAARLRSRLGEWRAR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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