Pseudomonas sp. M1, PM1_RS12415
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. M1 PM1contig_002, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACTGTCGCTGGTTGGACGATTGGACAAGGAGTAGTCCTCCGGGAGCAGCTATGCCACGTATCCCCGGCCGGGGCAGCCTGTTTGAACGGCTGGAACCGGA TGTGCAGCCATACCGGTCGCGTTCCCAAAGCGATCTGGCAACGGAGCGCATTACGGCGGTCAAACGGCATCTGGAGTGGATTCTCAACACCCGTCGGGGC AGCGCACCTAGCTGCCCCGACTTGGGGCTTCCGGATTTCAATGACGCCGCCATCGGTAGCGAAGACCTCCGCCTGAATGTCTGTGAAGCCATTCGTCAAC TCGTGGCTCGTTACGAACCACGTGTGCGACAGGTCGAAGTGCAACCCCGTCCGGATGCTCAAGGCCTGCCGTTGCTGCAGTTTCGTATCCATTGTGTGCT TCCCGTGAACAACGTGGATGAGCAGGTCGAAATCGACCTGCTCATCCACGGTCAAGACCAGTTCGCAAAAGTAACCTGACGCACCCGCCAGGAGGGCGCG
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| DNA Sequence for Gene |
>PM1_RS12415
ATGCCGCTAAGAACAAAATTCCGCGAGGAAATGGAGTTCCTGCACCGGATAGGAAGGGAGTTCGCGCACGAGAACCCGCAGCTGGCGCACTTCCTCGGAG AAGAAGCAAACGATCCGGACGTCCAGCGGCTACTGGAAGGCGTTGCTTTCCTGACCGCCAAGATGAGCCTGAAGATCGAAGACGACCTTCCCGAGCTCAC CCACTCCCTGCTGCAACTGCTATGGCCGAACTACCTGCGTCCGCTGCCCAGCGTCACGATGATGCGGTTCGAGCCCATGGAAAACGAAGTCACCACGTGC AAGCAGGTCCCCAAAGGCACGCCATTGCTGTCTCGACGCGTGGAAGGTGTGCAGTGCCAATTCCGCACCTGCAAAGAGGTGGAGGTTTACCCGCTACGGA TCGATGAAGTCAGCGATGCCCATTCCCAGGAGAAGTCGATCATGCGCATCGACTTGGCGCCGACGAGCCTGGATTTTGTCCTCAGCGACATGGATTGTGA CCGACTCGACTTTCACCTCAGCGGCGACGACACGACCGCACGCACCTTGTACCTATGGCTTGCCCGCTACCTTGAACATGTCAGGGTGGAGATCGACGGC ACCACCAGGCTTCTTCGTCCGAATGCGTTGGAGTTCCCCGGCTTCAGCCCGGAAGAAGCGCTGTTGCCCTACCCGAAGAACGTCTTCGACGGCTACCGCA TCCTGCAGGAGTACTTCCTCTTTCCCCAACGCTTCCACTTTTTCACGCTCAACCAGTTGCGTGCCCTGTGGCCCAACCACAAGGCGAGTCAGATTCGACT GGAGTTTCACTTCACCCGCCCTATGCCTGTCGGCATTCGATTGCGCACTACCGATGTGTCGCTCTACTGCACCCCGGCGGTAAACCTCTTCGAGCAAGGC GCCGAGCCAATCGATCTCAACGGGCGAACCATCGACCATCGCCTCCTTCCAATGGGCCTGCGCCCGGATGCCTACGAGGTATTCAGCGTCGATGAGGTCA GCGGTTGGCAACGCGAAGCCGATGGCAAGCGAGGACGCTGGCTGCGCACCTATCATCCTTTCGAGTCTCTACAGCATGAGATTGAGCATAGCCACGGGCG CACTGCACTCTATTACCGCACCCGCCTGGAGCCTGCGCATAGCGCCGAAGGTGTCCAGCATCGAATCGCCTTCATCAGGGCAGACGAGACTGATTACGCT GGCGAGAGCGAAACAGTTTCCCTATCGCTGACCTGTACCAATCGCGATTTGCCCCTATCGCTCGGTGTCGGCGACATCTGCTTTGGGACCGTGGGTGCCA TTAGCACACCCAACTTCGTACGCTTCCGCAACATTAGCGTACCTACGCCGTCCTATCGCCCGGTACTGGACGGCGAGTTGCAATGGAATCTTATCTCCAA CCTCTCGCTCAACTATCTCTCACTGCTTTCGATTGAGCCACTGCGCGCCGTCATCCGCGCCTATGACTTCGCTGCCTTGCATGATATTCGCCAAGCCAGG ACCAGCCGAAAGCGCGTTGAGGCAATCCTTGAAGCCCAGACGGCCCCTGCCGACCGCTTGGTCCGTGGCTTACCTGTTCGCGGAATGCGGACGCGCCTCA AGATGGACCAGTCCGGTTTTCTCTGCGAGGGCGACCTCTACCTGTTCTGTACGGTGCTGAGCCACTTCTTCTCCCTCTACGCCAGCATCAACTCCTTTCA CGTGCTGGAAGCTGTCAATGCCAGCAACAACGAGCATTACTCATGGCCAATGCAGATCGGCAAACAGCCGCTGATTTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CTGACGCCGTACTGGCCGACGCCAACAACTTCAACTTCTTCAGTCTGGTGGAACACCTGCATCGACTGCACGAAGATGACCTTGAAGCGCAGGACCGAAC GCGTCCGCAGAGGCAACGGGTACGTCTGTCCGCCTATGCAGGCCTGGGTTTCCCCGCAGCAGACGTCTCATTTGCGCAAAGGCTACCTCCACAGTCGGCC AGCGACTATCTGGTTCAGGCCACCTTCTTCGGCCTGCACGGCCCAGACTCCCCCCTGCCCGGCCACTATCTTGACCGCCTGGCTTACGAGGCAGGCCAAG GCGTAGGCATACGTCCAGCCTTCCTCGACGTCCTGCACCACCGCTTGCTGCTTCTGCTGCATCAAGCCTGGCGAAAATATCGCTACTACGTGCGGTTCCG TCAGGGCGCGCACGACCATTTCTCCCGCTATGTGTTCGCTTTGATCGGCCTGAGCGATAGCCGTCTACGCGGGGAAACGCCCATTGCCTGGAGCCGCCTG
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| Amino Acid Sequence |
>type VI secretion protein
MPLRTKFREEMEFLHRIGREFAHENPQLAHFLGEEANDPDVQRLLEGVAFLTAKMSLKIEDDLPELTHSLLQLLWPNYLRPLPSVTMMRFEPMENEVTTC KQVPKGTPLLSRRVEGVQCQFRTCKEVEVYPLRIDEVSDAHSQEKSIMRIDLAPTSLDFVLSDMDCDRLDFHLSGDDTTARTLYLWLARYLEHVRVEIDG TTRLLRPNALEFPGFSPEEALLPYPKNVFDGYRILQEYFLFPQRFHFFTLNQLRALWPNHKASQIRLEFHFTRPMPVGIRLRTTDVSLYCTPAVNLFEQG AEPIDLNGRTIDHRLLPMGLRPDAYEVFSVDEVSGWQREADGKRGRWLRTYHPFESLQHEIEHSHGRTALYYRTRLEPAHSAEGVQHRIAFIRADETDYA GESETVSLSLTCTNRDLPLSLGVGDICFGTVGAISTPNFVRFRNISVPTPSYRPVLDGELQWNLISNLSLNYLSLLSIEPLRAVIRAYDFAALHDIRQAR TSRKRVEAILEAQTAPADRLVRGLPVRGMRTRLKMDQSGFLCEGDLYLFCTVLSHFFSLYASINSFHVLEAVNASNNEHYSWPMQIGKQPLI
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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