Pseudomonas sp. M1, PM1_RS11670

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. M1 PM1contig_002, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GGTGGCTTCAAGGGCCCGGCCCTGCTGCAGAACATCCTCGAGAGCGGCCTGCGCTTCGGCGACATGGACATCTTCCACCGCCACGAGAGCATGGCCGGCA ACGGCGAAGTGCTGTTCTCCATGGCCAACGCGGTCAAGCCGGGCACCTTCGACCTGGACAACATCGACCAGTTCAGCACCCGCGCGGTGAGCTTCTTCCT TGGCCTGCCGGGCCCGCGCCATCCGAAGCAGGCCTTCGACGTGATGGTCGCCGCCGCCCGCAAGCTGGCCCACGAGCTCAACGGCGAGCTGAAGGACGAG CAGCGCAGCGTGATGACCGCGCAGACCATCGAGCACTACCGCCAGCGCATCATCGAGTTCGAACGCCGCGCGCTGACGCAGAAAAGATAAGCTGGAAGCC TAAAGCCCGAAGCCGGAAGCGACCCCTGTCCTTCCGGCTTTGCTTTTTGGCTTTCAGCTTCTAGCTTCCAGCTTCCAGCCTTTCGCTTATGGCTTCTTCT
DNA Sequence for Gene
>PM1_RS11670
ATGACCACCCAGACCGCCGCCCAACGCATCGCCCAGCTCCGCAGCGAGCTGGACGCGCACAACTACCGCTACTACGTGCTCGACGAGCCCAGCGTGCCGG ACGCCGAGTACGACCGCCTGTTCCGCGAACTGAAGGAACTGGAGGCCGAGCACCCCGATCTGGTCACCCCCGAATCGCCGACCCAGCGCGTGGGCGGGGC TGCCGCCTCGGCCTTCGGCGAAATCCGCCACGAAATCCCCATGCTCAGCCTGGGCAACGCCTTCGAGGAACAGGACCTGCTGGACTTCGACCGCCGCGTG CGCGAAGGCCTGGCCGACCTGCTGCCGGGCGGCGACCTGCTCGGCGGCGGCGCCGAGGTGGACTACAGCTGCGAGCCCAAGCTCGACGGCCTGGCGGTCA GCCTGCTGTACGAGAACGGCCGGCTGACCCGTGGCGCCACCCGCGGCGACGGCAGCACCGGCGAGGACATCAGCGCCAACGTGCGTACCGTGCGCAACAT CCCCCTGCGCCTGCACGGCGAGGGCTGGCCGGCAGTGCTGGAAGTGCGCGGCGAGGTGTTCATGTCCAAGGCCGGCTTCGAGGCGCTCAACGCCCGGCAG ATGGAAGCCGGCGCCAAGACCTTCGCCAACCCGCGCAACGCCGCGGCCGGCAGCCTGCGCCAGCTCGACCCGAAGATCACCGCCAGCCGCCCGCTGGAGT TGTGCGCCTACGGCTTCGGCCGCGTCGAGGGCGGCAGCCTGCCGGACACCCAGATCGGCATCCTCGAAGCCTTCAAGGCCTGGGGCATCCCGGTCAGCCG CGAGCTGAAGCTGGCCCGCGGGGTGAAGGGCTGCCAGGACTACTACGCCGACATCGGCGAGCGCCGCGACAGTCTGGCCTACGAGATCGACGGCGTGGTG TTCAAGGTCAACCGCATCGACTTCCAGCGCGAACTGGGCTTCCGCGCCCGCGAGCCGCGCTGGGCCATCGCCCACAAGTTCCCGGCCCGCGAGGAACTCA CCGAACTGCTCGACGTGGAATTCCAGGTCGGCCGCACCGGCGCCGTGACCCCGGTGGCGCGCCTGAAGCCGGTGCAGGTGGCCGGCGTCACCGTGTCCAA CGCCACCCTGCACAACATGGACGAAGTGGCGCGCCTGGGCCTGATGATCGGCGACACCGTGATCATCCGCCGCGCCGGCGACGTGATCCCGCAGGTGATG CAGGTGGTCGTCGAGCGCCGCCCGGCCGACGCGCGCCCGGTGCACATCCCCGAGACCTGCCCGGTGTGCGGCTCGCAGGTCGAGCGCACGCAACTGGTCA AGCGCGCCAAGGGCCGCGAGTCGGTCAGCGAAGGCGCCATCTACCGCTGCGTCGGCCGCCTGTTCTGCCAGGCGCAGCTCAAGCAGTCGATCATCCACTT CGTTTCGCGCCGGGCCATGGACATCGACGGCCTCGGCGACAAGATCGTCGAGCAACTGGTGGACAAGGGCCTGGTCAAGTCGCCGGCCGACCTCTACCGC CTGACCTACGAGCAGGTGATCGAGCTGGAAGGCTTCGCCGAGGTGTCCAGCAACAAGCTGCTCAAATCCATCGCCGACAGCCGCCGGCCGAGCCTGGCGC GCTTCGTCTACGCCCTGGGCATCCCCGACGTCGGCGAGGAGACCGCCAAGCTGCTGGCCCGCGCCCTGGGTTCGCTGGCGCGTATCCAGAAGGCCCTGCC GGAAGTGCTGACCTACCTGCCGGACGTCGGCGCCGAGGTGGCCTACGAGATCCACAACTTCTTCGCCGACGAGCACAACCGCAAGGTGATCGCCGAACTG CTCGACGCCGAGCACGGCGTGCAGTTGCAGGAGGAGGGCGAGGTGGCTGCCGAGTTCGCCGCCTGCGCCACCCTGGCCGGCTTCATCGACAAGCTCAACA TCCCCTTCATCGCCGCCACCGGCGCGGAAAAGCTGGCCAGCCGCTTCGGTTCGCTGGAAGGCATCATCCACGCCGACTGGCTCGACCTGCGCCAGGTCGA GCGCCTGCCCGAACGTGCGGCCAAGAGCCTGCGCGAGTTCTTCGACGACGCCGGCAATGCCAAGCGCACCCGTGAGATCGAGGAGCAACTGCGCGAGTTC GGCATGCACTGGGCGAGCGAGAAGAAGCAGGCCGAGGGCCTGCCGCTGGCCGGGCAGACCTGGGTGCTCACCGGCACCCTGGAGGCCATGAGCCGCGACG TCGCCAAGGAGAAGCTGGAAAGCCTGGGCGCCAAGGTCGCCGGTTCCGTGTCGGCCAAGACCCATTGCGTGGTGGCCGGCCCCGGCGCCGGCTCCAAGCT GGCCAAGGCCCAGGAACTCGGCGTCGACGTCATGGACGAAGAAGGGCTGCTGAAGCTGCTGGCCGACCACGGCCTGAACGCCTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
ACCCATTCCCAAGACCATTCGGAGAAGCAATACATGGCAATGACCAAGGAACAACTGGTACGCGACATCGCCGAGTCCCTCGACCTGACCCAGGCCTCGG TGCGTGGCGTGTTCGAGCAGTTGGCGCAGATCGTCCAGGACAGCCTGGAGAACGACGGCGAGCTGACCCTGCCAGGCATCGGCAAGCTCAAGGTCAGCGA GCGCGCCGCACGCACCGGGCGCAATCCGCAGACCGGCAAGAGCATCGAGATCGCGGCGAAGAAGGTGGTGCGCTTCGTCCCGGCCAAGGCCCTGGCCGAC AGTCTCAACTGACCGGAGGCGGCGATGGACAAGGCTAGAAAGCAGCGGCTCGCGGGGCTGATCGCCCTGGTCCTGCTGTTCGCCCTCTATGTGGCCTGGA CCGAGCGTCCGCAGATCCAGCTGCACTACGACGCCAACGCCAGCGCGCCGGCGAGCTACAGCTTCAAGGAGAACGGCGAGGAAACCCTCTCCGGGGAAAT
Amino Acid Sequence
>NAD-dependent DNA ligase LigA
MTTQTAAQRIAQLRSELDAHNYRYYVLDEPSVPDAEYDRLFRELKELEAEHPDLVTPESPTQRVGGAAASAFGEIRHEIPMLSLGNAFEEQDLLDFDRRV REGLADLLPGGDLLGGGAEVDYSCEPKLDGLAVSLLYENGRLTRGATRGDGSTGEDISANVRTVRNIPLRLHGEGWPAVLEVRGEVFMSKAGFEALNARQ MEAGAKTFANPRNAAAGSLRQLDPKITASRPLELCAYGFGRVEGGSLPDTQIGILEAFKAWGIPVSRELKLARGVKGCQDYYADIGERRDSLAYEIDGVV FKVNRIDFQRELGFRAREPRWAIAHKFPAREELTELLDVEFQVGRTGAVTPVARLKPVQVAGVTVSNATLHNMDEVARLGLMIGDTVIIRRAGDVIPQVM QVVVERRPADARPVHIPETCPVCGSQVERTQLVKRAKGRESVSEGAIYRCVGRLFCQAQLKQSIIHFVSRRAMDIDGLGDKIVEQLVDKGLVKSPADLYR LTYEQVIELEGFAEVSSNKLLKSIADSRRPSLARFVYALGIPDVGEETAKLLARALGSLARIQKALPEVLTYLPDVGAEVAYEIHNFFADEHNRKVIAEL LDAEHGVQLQEEGEVAAEFAACATLAGFIDKLNIPFIAATGAEKLASRFGSLEGIIHADWLDLRQVERLPERAAKSLREFFDDAGNAKRTREIEEQLREF GMHWASEKKQAEGLPLAGQTWVLTGTLEAMSRDVAKEKLESLGAKVAGSVSAKTHCVVAGPGAGSKLAKAQELGVDVMDEEGLLKLLADHGLNA
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site