Pseudomonas sp. M1, PM1_RS11540
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. M1 PM1contig_002, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCGTTCCCTGGCCGACATCGGCAAGGCCCTGGCCGAGCTGACCGGCTGGGCGACCAAGTAAGCGTTTCGCTTATTGCTCGTCGCGAGAGGCCACCTTCGG GTGGCCTCTTGTTTTGGCGAGGCGTCGCAAGAAGTGTCGTTCAGGCGACACGCCCTTTCATCCCGCCGACGAGCTGACATACGTCAGTACAGTTCATCGG GATAGATCGTTAGGCTAGCAACTATCCCCAGCACTGCGTTCCCCACAAGGGAAGGCGTGCTAACCGCCAACTCCTACCCGGAGCGGCGGCTATTCCGGAC CGTCATGGATGGCGGGACAACCAGAATGCAGGAGCAAAGGGGCCACGAGCCCATGGAAAACCTCTGCTATCGGACTTCCAAGAACAATCTCCCGTGCAGG TATGAACGCAGGCATCCCCGATGCGGCTGCGCCGTGCCCGTTCGGCTGTTGTGCCTTGGGAGGCCACGAAACCCGTTTAAGCACTGTGGTATTCCCCTAA
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| DNA Sequence for Gene |
>PM1_RS11540
ATGAACGTCTTGAAAGGCCAGGACATCCTGGCGCTCGGCTTTATGACCTTCGCCCTGTTCGTCGGGGCCGGCAACATCATCTTCCCGCCCATCGTCGGCC TGCACTCCGGTCCGCACGTATGGATGGCAGCCCTCGGCTTCCTGATCACCGCGGTCGGCCTGCCGGTCATCACCGTGGTCGCCCTGGCCAAGGTCGGCGG CGCCATGGACACCCTGAGCCACCCCATCGGGCGCGTCGCCGGCGGCCTGCTGGCGGCGGTTTGCTACCTCTCCGTGGGCCCGCTGTTCGCCACCCCGCGC ACCGCCACCGTGTCCTTCGAAGTCGGCCTGGCGCCGCTCACCGGCGACGGCCCGCTGCCGCTGTTCCTCTACAGCCTGGTGTACTTCGCCATCGTCCTGG TGATTTCCCTGTACCCCGGCAAGCTGCTGGACACCGTGGGCCGCTTCCTCGCCCCGCTGAAGATCATCGCCCTGGCCGCGCTGGGCATCGCCGCCTTCAT GCTGCCGGCCGGGACCATCGGCCAGGCCGAACCGAGCTACGAGCACGCGGCCTTCTCCCAGGGCTTCATCAACGGCTACCTGACCATGGACACCCTGGGC GCCCTGGTCTTCGGCATCGTCATCGTCAACGCCATCCGCTCCCGCGGCGTGCAGTCGCCGCGCCTGATCACTCGCTACGCGGTGATCGCCGGGCTGATCG CCGGGGTAGGCCTGGCGCTGGTGTACATCAGCCTGTTCCGCCTGGGCTCGGGCAGCCACGACATCGCCGCCGGCGCAACCAACGGCGCGGCCGTGCTGCA CGCCTATGTGCAGCACACCTTCGGCTCCCTGGGCAGCGGCTTCCTCGCCGTGCTCATCGCCCTGGCCTGCCTGGTCACCGCCGTGGGCCTGACCTGCGCC TGCGCCGAATACTTCTGCCGCATCCTGCCGCTGTCCTACCGCAGCCTGGTGGTGATCCTGGCCGGCTTCTCGCTGCTGGTGTCCAACCTCGGCCTGACCA AGCTGATCCAGTTCTCGGTGCCGGTGCTGACCGCCATCTACCCGCCGTGCATCGTGCTGGTGGCGCTGAGCTTCTGCGCCGGCCTGTGGAAGTCGCAGAC ACGCATAGTCGCGCCGGTGATGGCGGTGTCGCTGGCGTTCGGCATGGTCGACGCGCTCAAGGGCGCCGGCTTCGCCGTGCCGGAATGGCTGGCTCATCTG CCGCTGTCCGAGCAGGGCCTGGCCTGGCTGATCCCCTCGGTGGCCATGCTCGCCGTGATGGTGGTGATCGATCGTCTGCTCGGCGAACCGAGCGAAGCCG TGGCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCGGGCCCGCTGCAATGAGAAAGGCCGCCCACGAGGCGGCCTTTTTCGTTGCGCTGTCTTGCCGACGCGCCGAGGTGCTTTTGCTTGCTCGCGAATGGGA GTCGTCGGTGGCTACAGCGTTGGGTGTAAGAGCGCCCTCTCCCCAACCCTCTCCCGCAAGCGGGAGAGGGGGCTGTCCGGCGTGGGTGGTGAGTCCGGAG TCATCCGGATGCTCCCCAACCACGCGAACACGGGAACGTAGGGCGTATAACCGTTCGCGGTTATACGCCGTTGGACGTGCCTCTCAGATGTACTCCACCG AGAACTCCAGCTTCGCCGTGACGCGGCCGCTTACGGTGCCCGTGGTCCCGGCGCGGTAGTAGTGGGCGTGGTAGTCGAAGGTCATGACCGAGTCGGCCAC CTGCGGGGAGTTGTTTTCGTTGGTCATCAGGTCGATGGTGGCGTAGGTGCCGTTGCGCAGCTGGATTTCGATGTCCGAGTTGCCGTCGCCGCTCTGGTTC
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| Amino Acid Sequence |
>branched-chain amino acid ABC transporter substrate-binding protein
MNVLKGQDILALGFMTFALFVGAGNIIFPPIVGLHSGPHVWMAALGFLITAVGLPVITVVALAKVGGAMDTLSHPIGRVAGGLLAAVCYLSVGPLFATPR TATVSFEVGLAPLTGDGPLPLFLYSLVYFAIVLVISLYPGKLLDTVGRFLAPLKIIALAALGIAAFMLPAGTIGQAEPSYEHAAFSQGFINGYLTMDTLG ALVFGIVIVNAIRSRGVQSPRLITRYAVIAGLIAGVGLALVYISLFRLGSGSHDIAAGATNGAAVLHAYVQHTFGSLGSGFLAVLIALACLVTAVGLTCA CAEYFCRILPLSYRSLVVILAGFSLLVSNLGLTKLIQFSVPVLTAIYPPCIVLVALSFCAGLWKSQTRIVAPVMAVSLAFGMVDALKGAGFAVPEWLAHL PLSEQGLAWLIPSVAMLAVMVVIDRLLGEPSEAVA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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