Pseudomonas sp. M1, PM1_RS06920

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003824 catalytic activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF48557
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0019619 3,4-dihydroxybenzoate catabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02426
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PRINTS PR00145 Argininosuccinate lyase family signature - - 140 160 3.2E-10
PRINTS PR00149 Fumarate lyase superfamily signature IPR000362 Fumarate lyase family 230 257 1.8E-23
Gene3D G3DSA:1.20.200.10 Fumarase/aspartase (Central domain) - - 1 363 1.5E-115
PANTHER PTHR43172 ADENYLOSUCCINATE LYASE - - 4 445 8.2E-115
PRINTS PR00145 Argininosuccinate lyase family signature - - 275 291 3.2E-10
FunFam G3DSA:1.20.200.10:FF:000014 3-carboxy-cis,cis-muconate cycloisomerase - - 1 360 0.0
Gene3D G3DSA:1.10.40.30 - - - 364 448 1.8E-29
SUPERFAMILY SSF48557 L-aspartase-like IPR008948 L-Aspartase-like 5 446 1.73E-122
Pfam PF10397 Adenylosuccinate lyase C-terminus IPR019468 Adenylosuccinate lyase C-terminal 364 441 7.9E-19
PRINTS PR00149 Fumarate lyase superfamily signature IPR000362 Fumarate lyase family 145 163 1.8E-23
PRINTS PR00149 Fumarate lyase superfamily signature IPR000362 Fumarate lyase family 275 291 1.8E-23
Pfam PF00206 Lyase IPR022761 Fumarate lyase, N-terminal 11 300 1.2E-68
FunFam G3DSA:1.10.40.30:FF:000007 Adenylosuccinate lyase - - 363 444 1.1E-22
PRINTS PR00149 Fumarate lyase superfamily signature IPR000362 Fumarate lyase family 100 118 1.8E-23
NCBIfam TIGR02426 JCVI: 3-carboxy-cis,cis-muconate cycloisomerase IPR012789 3-carboxy-cis,cis-muconate cycloisomerase-like 5 348 0.0
PRINTS PR00145 Argininosuccinate lyase family signature - - 230 254 3.2E-10
CDD cd01597 pCLME - - 5 444 0.0
SMART SM00998 ADSL_C_2 IPR019468 Adenylosuccinate lyase C-terminal 363 442 1.5E-28
PRINTS PR00145 Argininosuccinate lyase family signature - - 99 121 3.2E-10

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.