Pseudomonas sp. M1, PM1_RS06290

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. M1 PM1contig_002, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CGCGCTGGGCTACTACTGGAACGTGCGCCTGGACTTCAACGAGCGCCAGGTCGCGCCGAGCAACGACGCCATCGATTTCTACGCGGCCAATGCCCACAGC CTGCAGTACCGCGAGGACGGCAGCCTGGCCTACGAGATGACCGCCGATCGCCTGGAGCACATGAAAGCCACCGACGTCACCAACGTCACCACGCCGGACC TGTTCTTCTTCCGTGAGGGCGAGCCGCAGCCGTGGCACGTGCAGAGCGTGCGCGCCGAGGTCGGCCCGGAAGGCAAGCAGGTCGAACTGATCGACAACGT CCGGGTCCAGCGCACCGACGCGCAGAACCGCACCCTGCTGCTCACCACCACGCGCATGACGGTGTTCCCGGACAAGGATTATGCCGAGACCAGTCAACCC GTTAAGATCACCGAGCCCCAAGGGGTGACCACGGCGGTAGGCATGAAAGCGTATCTGAAAGACAGCCGGATGACCCTGCTGTCCAACGTAAGAGGTCAGC
DNA Sequence for Gene
>PM1_RS06290
ATGAGGTTCGTTAAAACCTTCCCCCTTTTCCTCGGCCTCGTCGCCGCCCTGGGCAGCAGCGCTGGCTGGGCGCTGCCGACGGATCGCGAGCAGCCGATCC GCGTGCAGGCCGACAGCGCCGAACTGGACGACAAGCAGGGCGTCGCGGTGTACCGCGGCGACGTGGTGGTGACCCAGGGCAGCATGAAGCTGACCGGCAA CACCGTCACCCTCAAGCAGAACAAGGACGGCGAGATCGAGGTGGTCACCTCGGTCGGCAAGCCCGCCTATTTCGAGCAGAAGCCGGCGCCGGACAAGGAA ATCACCAAGGCCTACGGCCTGACCATCCAGTACTTCGTCACCCAGAACCGGGTGATCCTGATCGACCAGGCCAAGGTGATCCAGGAAGGCAACACCTTCG AAGGCGAGAAGGTCGTCTACGACACCGAACGGCAGATCGTCAACGCCGGCCGCGCCACCGGCACCCAGGTGACCACCCCGCGCCCGCGCATCGACATGGT CATCCAGCCCAAGAAGAAGCAGGATCAAGCCCAGTAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
TGGCCACGCTCACCGCACAGCACCTCGCCAAGAGCTACAAGGGTCGCCAGGTCGTCCGCGATGTCAGCATGAGCATCGACAGCGGGCAGATCGTCGGCCT GCTCGGCCCCAACGGCGCCGGCAAGACCACCTGCTTCTACATGATCGTCGGCCTGGTCCGCGCCGACCAGGGCGTGGTCCGCATCGACGAGCAGGACGTC ACCAACCTGCCCATGCACGGCCGCGCCCGCGCCGGCATCGGCTACCTGCCGCAGGAAGCCTCGATCTTCCGCAAGCTGTCGGTGGCGGACAACATCGGCG CCATCCTCGAGACCCGCGCCGACCTCGACCGCAACGGCCGCAAGGAGGCCCTGGAAGGCCTGCTGGAGGAGTTCCACATCCACCACATCCGCGACAACCT CGGCATGAGCCTGTCCGGCGGCGAGCGCCGCCGCGTGGAGATCGCCCGCGCCCTGGCCAGCTCGCCGAAGTTCATCCTCCTCGACGAACCCTTCGCCGGC
Amino Acid Sequence
>LPS transport periplasmic protein LptA
MRFVKTFPLFLGLVAALGSSAGWALPTDREQPIRVQADSAELDDKQGVAVYRGDVVVTQGSMKLTGNTVTLKQNKDGEIEVVTSVGKPAYFEQKPAPDKE ITKAYGLTIQYFVTQNRVILIDQAKVIQEGNTFEGEKVVYDTERQIVNAGRATGTQVTTPRPRIDMVIQPKKKQDQAQ
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site