Pseudomonas sp. M1, PM1_RS05755
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. M1 PM1contig_002, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GAAGCACACAAACGCTCGGAGAAGTTCCGCGACTCGGTCGATAGAGGCATCCTGAAACTCCCCATTGTCGGCGGCATCATCTACAAGTCCGCCGTCGCCC GTTATGCACGCACCCTGTCCACTACATTCGCCGCTGGCGTGCCGTTGGTGGAGGCACTCGATTCGGTAGCTGGTGCCACCGGCAACGTGGTGTTCCGCAA TGCGGTGAACAAAATCAAACAGGACGTTTCCTCTGGTACCCAATTGAATTTCTCGATGCGTACCACCGGCGTCTTCCCGACCATGGCCATCCAGATGGCA GCTATCGGCGAAGAGTCCGGTTCGCTCGACGGCATGCTGGACAAAGTAGCCTCCTACTATGAAGAAGAAGTCGACAACGCCGTCGACAACCTCACCACCC TGATGGAACCCATGATCATGGCAGTCCTCGGCGTACTGGTCGGCGGCCTGATCATCGCCATGTACCTCCCCATCTTCCAACTGGGCTCCGTCGTCTAAGC
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| DNA Sequence for Gene |
>PM1_RS05755
ATGCCTGTACTCGACTTCCTGGCCAGCTACGAGCTGGCCTTTGTTTTATGCGCCGCCCTGCTCGGCCTTCTGGTCGGTAGCTTCCTCAACGTGGTCATCC ATCGCCTGCCGAAGATGATGGAGCTGGAATGGCAACAGCAGGCACGTGATGCGCTTTCCCTGCCCCAGCCCGAGCAAAAGGCCACCTACAACCTGGTTCT GCCCAACTCCCAGTGCCCGCATTGCGGTCATGAAATCCGTGCCTGGGAGAACATCCCCGTCATCAGCTACCTGGCCTTGCGCGGCAAGTGCTCGGCCTGT AAGGCGCCGATCAGTGCGCGTTATCCGCTGGTCGAGCTGGCCACCGCTCTACTCTCCGGTTTCGTTGCCTGGCACTTCGGCTTTACCTGGCAGGCTGGGG CCATGCTGTTGCTGACCTGGGGGCTGTTGGCCATGAGCCTGATCGATGTCGATCACCAGTTGCTGCCGGATGCGTTGGTGCTGCCGCTGCTCTGGCTGGG CTTGATCGTCAATTACTTCGGGCTTTTCACCAGCCTGGGCGATGCGCTCTGGGGTGCGGTGTTCGGTTACCTGAGCCTGTGGTCGGTGTACTGGCTGTTC AAGCTGCTGACCGGCAAGGAAGGCATGGGTTATGGCGACTTCAAGCTGCTGGCCATGCTCGGCGCCTGGGGTGGCTGGCAGGTGTTGCCGCTGACCATCC TGTTCTCGTCCCTGGTCGGGGCCGTGCTGGGCGTCATTCTGCTGCGTCTGCGCAATGCCGAGACCAGCACGCCGATCCCCTTCGGGCCCTATCTGGCCAT CGCCGGCTGGATTGCGCTGCTCTGGGGTGATCAAATAACCACTACCTATCTGCAGTTCGCCGGTTTCCGGTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CTCCTGCTCGAACGCTGGCTCGCCTGGTCCCCTGCGTTCGCGGGGCGACGGGGAGCCTGGCGCGAGGAGTACGATGAAACCCTGGATCCTTGGCCTCACC GGCGGCATCGGCAGCGGCAAGAGCGCCGCCGCCGCCCACTTCGCCAACCTTGGCGTGCACATGGTGGATGCCGACCATGCCGCGCGCTGGGTCGTCGAGC CCGGCCGGCCGGCGCTGGCGAGCATCGTGGAACGCTTCGGCGAAGCCATGCTGCAGCCCGACGGCACCCTGAACCGCGCCGCCCTGCGCGAGCGCATCTT CCAGTCCGCGGAGGAACGCCGTTGGCTGGAGCAGTTGCTGCACCCGCTGATCGGCCAGGAGATCGCCAGCAACCTGGCGCAGGCCGAATCGCCCTATGCC ATCCTGGTTTCGCCGCTGCTGGTGGAGTCCGGGCAGCACCGCATGGCCCAGCGGGTGCTGGTGGTGGACACGCCTGAGCACCTGCAGTTGGAGCGCACCG
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| Amino Acid Sequence |
>type 4 prepilin peptidase PilD
MPVLDFLASYELAFVLCAALLGLLVGSFLNVVIHRLPKMMELEWQQQARDALSLPQPEQKATYNLVLPNSQCPHCGHEIRAWENIPVISYLALRGKCSAC KAPISARYPLVELATALLSGFVAWHFGFTWQAGAMLLLTWGLLAMSLIDVDHQLLPDALVLPLLWLGLIVNYFGLFTSLGDALWGAVFGYLSLWSVYWLF KLLTGKEGMGYGDFKLLAMLGAWGGWQVLPLTILFSSLVGAVLGVILLRLRNAETSTPIPFGPYLAIAGWIALLWGDQITTTYLQFAGFR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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