Pseudomonas sp. M1, PM1_RS05440

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08447
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd00130 PAS IPR000014 PAS domain 852 954 6.70231E-9
PANTHER PTHR44757 DIGUANYLATE CYCLASE DGCP - - 839 1397 0.0
SMART SM00091 pas_2 IPR000014 PAS domain 574 643 0.0075
CDD cd00130 PAS IPR000014 PAS domain 299 384 2.07841E-5
Pfam PF08447 PAS fold IPR013655 PAS fold-3 601 689 6.4E-13
Gene3D G3DSA:3.30.450.20 PAS domain - - 705 843 2.7E-24
SMART SM00052 duf2_2 IPR001633 EAL domain 1143 1389 1.1E-125
SMART SM00086 pac_2 IPR001610 PAC motif 652 695 2.0E-4
SMART SM00091 pas_2 IPR000014 PAS domain 286 351 9.8E-6
Coils Coil Coil - - 891 911 -
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 968 1129 9.3E-54
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 855 965 5.11E-22
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 571 701 1.7E-8
FunFam G3DSA:3.20.20.450:FF:000001 Cyclic di-GMP phosphodiesterase yahA - - 1144 1399 7.3E-102
Gene3D G3DSA:3.30.450.20 PAS domain - - 844 968 9.3E-33
Gene3D G3DSA:3.30.450.20 PAS domain - - 272 408 6.6E-12
Pfam PF13426 PAS domain IPR000014 PAS domain 718 834 1.1E-11
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 559 693 4.01E-16
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 844 963 6.2E-19
CDD cd00130 PAS IPR000014 PAS domain 596 692 5.98138E-6
MobiDBLite mobidb-lite consensus disorder prediction - - 339 360 -
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 692 833 3.93E-19
SMART SM00267 duf1_3 IPR000160 GGDEF domain 957 1133 1.3E-74
SUPERFAMILY SSF141868 EAL domain-like IPR035919 EAL domain superfamily 1148 1396 7.98E-93
Pfam PF13426 PAS domain IPR000014 PAS domain 855 956 2.7E-16
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 973 1134 9.22E-53
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 703 841 1.0E-13
CDD cd00130 PAS IPR000014 PAS domain 716 832 7.52501E-7
SMART SM00091 pas_2 IPR000014 PAS domain 843 910 2.0E-7
SMART SM00086 pac_2 IPR001610 PAC motif 793 835 2.0E-5
Pfam PF13188 PAS domain IPR000014 PAS domain 288 337 0.011
Pfam PF00563 EAL domain IPR001633 EAL domain 1149 1384 5.0E-76
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 470 569 4.89E-6
SMART SM00091 pas_2 IPR000014 PAS domain 707 774 3.1E-5
Gene3D G3DSA:3.30.450.20 PAS domain - - 571 693 5.6E-17
CDD cd01949 GGDEF IPR000160 GGDEF domain 969 1131 1.09467E-64
Gene3D G3DSA:3.30.450.20 PAS domain - - 413 570 3.8E-6
FunFam G3DSA:3.30.70.270:FF:000001 Diguanylate cyclase domain protein - - 963 1135 8.9E-47
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 965 1131 1.8E-42
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 275 374 1.83E-9
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 969 1139 3.0E-65
CDD cd01948 EAL IPR001633 EAL domain 1149 1389 6.02695E-112
Gene3D G3DSA:3.20.20.450 EAL domain IPR035919 EAL domain superfamily 1144 1398 3.2E-105
SMART SM00086 pac_2 IPR001610 PAC motif 915 957 6.9E-5

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.