Strain | Pseudomonas sp. M1 PM1contig_002, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
ACCAGCGGCACGCCGGGCAGCGACTGCATGATCTCGACCACGGTGTCGACCATCTCCACCGAGCCGAGCATGCCCAGCTTGACCGCGGCCACCGGCAGGT CGGCGATCACGGCGTTGGCCTGGGCCAGCACCCACTCGCGGTCGAGCACGCGGAAGTCGGAAACGTTGACGGTGTCCTGAACGGTCAGCGCGGTGACGGC GGGCGCCGCATGGCAGCCTTGGGCGATCAGGGCTTCGATGTCGGCCTGCAGGCCGGCGCCGCCACTGGGGTCGTGGCCGGACAGGCAGAGCACTACGGGA CGGGAGGTTGGCGTTTTCATGGCGCGGGAGCTTACCACTAAACCCGGCAGGCGTCGTTTGCCCCGACCCCCGGCCCGGCGCTGCTTGATCGTCATGCCGG CGTGCTAAAGTTGGCCGATTCGAAAATCACGCCCACAGGGCGCGCCGATCGCGGGGGATGGGGCCCCTGGGCGCCGTCCGGAGGGGCACTGCGGGGTAGC
|
|
DNA Sequence for Gene |
>PM1_RS04980
ATGCAGCGCTGGCTGATCCTCTTCCTTCTCCTTCTTTCGCCGCTGGCCGGCGCGGTCAGCTTCGACGAGCACACCAGCCGCCTGCCGCTGGGCCACTCGA TCGACGTCTTCGAGGACGTGCGCGGCACCGCCGACATCGCCGACATCACCTCCGCGGCCCTGGCCGACAGCTTCCGCCGCCACGACCGCGACGTGCTCAA CGCCGGCTACTCGCGCTCGGTGTTCTGGATCCGCCTGGACCTGGACTACCGCCCGCAGGAGTCCCAGGACCCGGCGCCCTGGCTGCTGGAACTGGCCTAC CCGCCGCTGGACCGCCTGGACCTCTACCTGCCCGGCGCCGACGGCAAGTACCAGCTGGCCCAGCGCACCGGCGACACCCTGCCGTTCGCCAGCCGGCCGA TCAGCCTGACCAACTACCTGTTCGACCTCAAGCTTGCGCCCGGCAAGCCGCTGCGGGTGTACCTGCGCCTGGAGAGCCAGGGCTCGATCCAGGCGCCGCT GACGCTCTGGTCGCCCAAGGCCTACATGGAAAACCTGCCGGGCAACGTCTACGTGCTCGGCATCATCTACGGCGTGCTGCTGGTGATGCTGGTGTACAAC CTGTTCATCTTCGTCAGCGTGCGCGACACCAGCTACCTCTATTACATCCTCTACATCGCCTCCTTCGGCCTCTACCAGGTCTCGGTCAACGGCGCCGGCA TCGAGTACTTCTGGCCCAACAGCCCCTGGTGGGCCAACGCCGCCACGCCCTTCCTGATCGGCTCCGCCAGCCTGTTCGGCTGCCAGTTCGCGCGCAGCTT CCTGCACACCCGCGAACACAGCCCGTGGGTCGACCGCACCCTGCTGGCGCTGATGGCCGTGGGCGCGCTGGTGATGCTGCTGGCGTTCTCGGCCAGCTAT GCGCTGTCGCTGCGCCTGGCCACCTACCTGGCGCTGGCCTTCGTGGTGGTGATCTTCAGCGCCGGCATCCTCGCCTGGCTGCGCGGCATGCGCGTGGCGC GCTACTTCATCTTCGCCTGGACCGCCTTCCTCCTCGGCGGGACCATCAACACTCTGATGGTGCTGGGCTTGCTGCCCAACGTGTTCTTCACCATGTACTC CGGGCAGATCGGCTCGGCGCTGGAGGTGGGCCTGCTGTCCCTGGCCCTGGCCGACCGCATCAACGCCATGAAGGAAGAGCGCACGCGCATCCTCCAGGAA TCCAGTCGCAAGCTGGAGCAGCTCAACCTCGAGCTGGCCAACAGCAACCGCCTGAAGGACGAGTTCCTGGCCACCGTCACCCACGAGCTGCGCACGCCCA TGAGCGGGGTGATCGGCTCGCTGGAGCTGATGCAGACGGTGCCCATGGACGTGGAGCTGGCGCAGTACCAGAAGACCGCCACCGGCTCGGCGCGCGACAT GATGCGCATGGTCAACGACATCCTCGCGCTGATTGAACTGCAGGCCGGCAAGCTCTACCCGCGGCGCGAGCCCTTCAGCCTGCGCGGCCTGTTCGACAGC CTGCGCGCCCAGTATGCGCCGCGCGCCGAGGCCAAGGGCCTGCGCTTCGACCTGCAGCTGGACGAGAACCTGCCCGACACCCTGGAAGGCGACGCCGGCA AGCTGGCCCAGACCCTCGGCTACCTGCTGGACAACGCCATCAAGTTCACCCACCAGGGCGGCGTGAGCCTGCGCGTGGACGGCCAGCGGCAGAGCGACGG CGTCGCCCTGCGGGTGACGGTGCAGGACTCCGGCATCGGCTTCGAGACGCCGGCCGACGATGCGCTGTACCAGCGCTTCCACCAGCTCGACGGCTCGCTG ACCCGCGAGTACGGCGGCCTGGGCATCGGCCTGGCGCTGTGCCGCCAGCTCACCGAGCTGCTCGGCGGGCAGCTGCAGCACCATTCCAGCCCCGGGCGCG GCAGCCGCTTCGTCCTCGAACTGAACCTCGGCCAGCCGGCGCAGAGCTTCAGCGTGCCGCCACGCCGCGCCGGCGGCCAGGCCCTGCGCCGTCCGGAACA GTGCACGGTGCTGGTGGTGGAGGACAACGCCATCAACCAACTGGTGATCCGCGGCATGCTGCTCAAGCTGGGCTACCGGGTGCGCACCGCCGACAACGGC TCGGAAGCCATCGACCTGCTGCGCCGCGAAGGCGTCGACGCCGTGCTGCTGGACTGCCAGATGCCGATCATGGACGGCTTCGCCACCTGCCGGGCGATCC GCGCGCTGCCCCAGGGCGGCGAGCTGCCGGTGCTGGCCATCACCGCCCACAGCCACAGCGGCGACCGCGAGCGCTGCCTGGCGGCGGGGATGAGCGACTA CCTGGCCAAGCCGGTGAAGTTCGAGGAGCTGCAGACCCTGCTGCACGACTGGCTGCTGTGCCAGCCGGCGCTGCCCAGCCACGCCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
DNA Sequence Downstream of Gene |
TCCGCCGCGCCCGTTGCGTCACGCGGCGCGCTCCGCTGGCCGGAACGCCCGCACCGCTGGCGCAATTCCCCCTATGGCCAAGTCCTGAACCGTGATTCAC TGCTTGAAACAGTGAATCCGGATTCAGAGCATGGTCTACCGTCTCACCGAAGCCCGCCTGCAGAAAGATGTGGAGCTGCGCGAACGCATCCTCCAACTGG CCCTGGCGCGGGTCGCCGAGGGCGGCTTCGCGGCGCTGACCATGCAGGGCCTGGCCGAAGAGGCGGGCATCGCCACCGGCAGCCTGTACCGGCATTTCCG CGGCAAGGGCGAACTGGCCGCCGAAGTCTTCGCCCGCGCCAGCCAACGTGAGGTGGACGCCCTGGCCGTCGTCCTGCGCGGCCCAGGCGGGCCCGCCGGG CGCCTGGCCCGTGGCCTGCGCCAGTTCGCCCGGCGCGCCTGGGAGAGCCGGCGCCTGGCCTTCGCCCTGATCGCCGAACCGGTCGACCCCGAGGTGGACG
|
|
Amino Acid Sequence |
>Lost Adherence Sensor, LadS
MQRWLILFLLLLSPLAGAVSFDEHTSRLPLGHSIDVFEDVRGTADIADITSAALADSFRRHDRDVLNAGYSRSVFWIRLDLDYRPQESQDPAPWLLELAY PPLDRLDLYLPGADGKYQLAQRTGDTLPFASRPISLTNYLFDLKLAPGKPLRVYLRLESQGSIQAPLTLWSPKAYMENLPGNVYVLGIIYGVLLVMLVYN LFIFVSVRDTSYLYYILYIASFGLYQVSVNGAGIEYFWPNSPWWANAATPFLIGSASLFGCQFARSFLHTREHSPWVDRTLLALMAVGALVMLLAFSASY ALSLRLATYLALAFVVVIFSAGILAWLRGMRVARYFIFAWTAFLLGGTINTLMVLGLLPNVFFTMYSGQIGSALEVGLLSLALADRINAMKEERTRILQE SSRKLEQLNLELANSNRLKDEFLATVTHELRTPMSGVIGSLELMQTVPMDVELAQYQKTATGSARDMMRMVNDILALIELQAGKLYPRREPFSLRGLFDS LRAQYAPRAEAKGLRFDLQLDENLPDTLEGDAGKLAQTLGYLLDNAIKFTHQGGVSLRVDGQRQSDGVALRVTVQDSGIGFETPADDALYQRFHQLDGSL TREYGGLGIGLALCRQLTELLGGQLQHHSSPGRGSRFVLELNLGQPAQSFSVPPRRAGGQALRRPEQCTVLVVEDNAINQLVIRGMLLKLGYRVRTADNG SEAIDLLRREGVDAVLLDCQMPIMDGFATCRAIRALPQGGELPVLAITAHSHSGDRERCLAAGMSDYLAKPVKFEELQTLLHDWLLCQPALPSHA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|