Pseudomonas sp. M1, PM1_RS03755

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. M1 PM1contig_002, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GTGGAAGTCCGCCCCCAGGCCGCGCCGCAGCGCAGCCGCATCCTGCACGGCGGCGAGCAGCTCGACCTCGACGCGCTGGAACTCGGCCAATTGCGGCACA ACGACGCCAACACCGCGGCCTGGCTGGCCGGCAGCCTGATCGCCGTGGACCGCCCGCTGGGCGAGCTGCTGGAGGAACTCTCGCGCTACCGCAACGGCGT GCTGCATTGCGACCCGCAGGTGGCCGGCCTGAAGGTCTCCGGCAACTTCCCCATCGGCGACACCGACCTGGCCCTGGCCGCCCTGGAATCCGGCTTCGAC CTGCGCATCGTGCGCCATACGCGCTTCTGGATCAGCGTGCAGCCACGCGCCTGAACGCCGGGGGCGAAAAAAATCCGCCCGTCCTTGCACTTTTTTCCGC CCTCGCCCGGCCCCCTCTTATTCCGGGCCATCTGGCCCAACTTGGGGGAGCTTGCATGAACCGCTACACCGCCCCGGCGCCGACCACCGGCAGCCGCTCG
DNA Sequence for Gene
>PM1_RS03755
TTGCACAAACCGCTGGCCCTGGCCATCGCCCTGGCCCTGGGCGCCGGCGCGCTCGCCGCCACCACGGCCCAGGCCGCGGAAGCCGCGCGCTACGACATCG CCGCCGGCCCGCTGGCCGAGGTGCTCGGGCGCTTCGCCAGCGCCGCCGGGGTGGCCCTGTCGTTCGACGCCGCGCAACTGCGCGGCCGCCAGTCCACCGG CCTGCACGGCAGCTACGACGTCACCGGCGGCTTCAGCGCGCTGCTCGCCGGCAGCGGCCTGGAAGCCGAGCCCCAGGCCAACGGCAGCTACGTGCTGCGG CCACTGCCCACCGACGGCGCCGTGGCCCTGTCGGCCAGCACCATCACCGCCAGCCTCGGCGCCGAGACGCTGCCGCCCGCCTATGCCGGCGGCCAGGTGG CCAGCGGCGCGCGCCTGGGCATGCTGGGCAACGCCGACCTCATGGACACGCCCTTCAGCGTCACCAGCTACACCGCGCAGACCATCGAGGCCCAGCAGGC GCGCAGCGTCGCCGACCTGCTGGTGGCCAACGACCCGTCGGTGCGGGTGGTCGGCGGCCGCGGCGACCTGGTGGACACCTACGTCATCCGCGGTTTCAAC GTGAACAACGCCGACGTCGCCCTCAACGGCCTGTACGGCGTGCTGCCCTACTGGCGGGTGCCGATCGAGTTCGCCGAGCGCGTGGAAGTGCTCAAGGGCC CCACCGCCCTGCTCGGCGGCATGTCCCCCGGCGGCAGCGTCGGCGGCACCATCAACCTGGTGCCCAAGCGCGCCGAGGACCAGCCGCTGACCCGCGTCAG CCTGGACTGGACCGACCGCTCGCAGGTCGGCACGCACCTGGACACCGGCCGCCGCTTCGGCGAGGGCAACGCCTTCGGCGTGCGCTTCAACGGCGTGTAC CGCAACGGCGACACCGCCATCGACCACCAGAGCCGCGAGTTCCCGCTGATGTCCCTGGCCCTGGACTTCCGCGGCGAGCGCCTGCGCCTGTCCAGCGACC TGCTGTACCAGAAGGAAAGCCTGGAGGGCGTGGTGCGCCCGGTAATCACCGGCACCGCCACCAGCGTCCCCCACGCGCCGGACTCCAAGACGCGCTTCGG CCTGCGCGACTCCTACCTGGACCAGGAGGACTACTCCCTGGTCAACCGCGGCGAGTACGACCTCGGCGACCACCTCACCGCCTTCGCCAGCGTCAGCGGA CGGCAGAGCAACTACGAGACCGTCGCCGCCAACAGCATCCTCAACGGCAACCAGGGCGACATCATCAACGGCCTGGCGCGCCAGCGCGCCGACCGCCGCA CCTACTCCGGCGAGGCCGGCCTGCGCGGCGACTTCGACACCGGCCCGGTGCGCCACGACTGGACCTTCAGCGCCAACCGCCTGCACGAGCGCGTGGGCAT GGTCTACGTGTTCACCGGCATGCAGCCGGGCAGCCTCTACGAGACTTCGCCGCACACGCCGATCCCGGACTTCTCCAGCCTCGACGGCGGCATCCCCAAG ACCAACGAAACCGACCTTTCCGGCGTGGCCCTGGCCGACAAGCTGTCGATCCTCGACGAGCGCGTGCAGTTCACCGCCGGCGTGCGCCGGCAGACGGTGC AGTCCAAGGACTACGACCCGTCCAGCGGGGCGCGCACCAACAAGTACGACGAGCACGCCTGGACGCCGATGTTCAGCCTGCTGGTCAAGCCGCTGGACGA GCTGTCGCTGTACGCCAACTACATCCAGGGCCTGAGCCAGGGCGACACCCCGCCCTCCACCGCGGCCAACGCCGGCCAGGCGCTGGCGCCGTACAAGGCC GAGCAGTACGAGGTCGGCGCCAAGTACGAACTGGGCAGCTTCACCACCACCCTGGCGCTGTTCGAGATCAAGAAGCCCAACGCCTTCCTCGACGCCGACA ACGTGTTCCGCGCCGACGGCGAGCAGCGCAACCGCGGCATCGAGCTGAGCCTGTTCGGCGAACTGACCGACGACCTGCGCGTGCTGGCCGGCGCCACCTA CATCAAGGCCGAGCAGAGCAAGACCGCCAACCCCGCCAGCGAAGGCCAGGACGCCCCCGGCGTGCCGCGGCGCCAGGCCAACCTGGGGCTGAGCTGGGAC ACCCCGTTCGTCCAGGGGCTGACCCTCGACGGCCGCTGGATCTACACCGGCGCGGCCTACCTGGACACCACCAACGACCTCAAGGTCCCGCACTGGAACC GCGTCGACGTCGGCGCCAGCTACGCCTTCCAGGTCGCCGGCAAGCCGCTGGTGGCGCGGGCCAACCTGGAGAACCTGCTGGCCAAGGACTACTGGACCGC GTCCAACGGCTACATGACCGTCAGCTCGCCGCGCACCCTGTCGCTGTCGCTGACCGCGGACTTCTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GGCGCCCATGACCGCGAAAGCCCTGCGCACCTGGTACCTGGTGCACAAGTGGACCAGCCTGGTGTCCACGCTGTTCCTCCTGCTGCTGTGCCTGACCGGC TTGCCGCTGATCTTCCACGAGGAGATCGAGCACTACCTGGAACCGCACCCGGAACTCAAGCCGCTGACCGCCGAGTCGCCACGCATCGACTACGACGACG TGGTGGCCCGCGCCCTGGCCGCGCGCCCGGGCGAGGTGGTGCGCTTCGTGGTGTTCGACCCCGACGAGCCGCTGGGCGCGGTGATCACCGCGCCCAGCCT GGTGCCGCCGCCGGAGATCGGCCACGTGCAGCCGTTCGACGCGCGCACCGGCGAGTTCTTCGACCCGGAGCCGCCGCCCGGCGGCTTCATGTACCTGATG CTCAAGCTGCACACCGACCTGTTCATGGGCCTGCCCGGCTACCTGTTCCTCGGCTTCATGGGGCTGCTGCTGGTGGCCTCGCTGGTGTCCGGGGTGGTGG
Amino Acid Sequence
>ligand-gated channel
MHKPLALAIALALGAGALAATTAQAAEAARYDIAAGPLAEVLGRFASAAGVALSFDAAQLRGRQSTGLHGSYDVTGGFSALLAGSGLEAEPQANGSYVLR PLPTDGAVALSASTITASLGAETLPPAYAGGQVASGARLGMLGNADLMDTPFSVTSYTAQTIEAQQARSVADLLVANDPSVRVVGGRGDLVDTYVIRGFN VNNADVALNGLYGVLPYWRVPIEFAERVEVLKGPTALLGGMSPGGSVGGTINLVPKRAEDQPLTRVSLDWTDRSQVGTHLDTGRRFGEGNAFGVRFNGVY RNGDTAIDHQSREFPLMSLALDFRGERLRLSSDLLYQKESLEGVVRPVITGTATSVPHAPDSKTRFGLRDSYLDQEDYSLVNRGEYDLGDHLTAFASVSG RQSNYETVAANSILNGNQGDIINGLARQRADRRTYSGEAGLRGDFDTGPVRHDWTFSANRLHERVGMVYVFTGMQPGSLYETSPHTPIPDFSSLDGGIPK TNETDLSGVALADKLSILDERVQFTAGVRRQTVQSKDYDPSSGARTNKYDEHAWTPMFSLLVKPLDELSLYANYIQGLSQGDTPPSTAANAGQALAPYKA EQYEVGAKYELGSFTTTLALFEIKKPNAFLDADNVFRADGEQRNRGIELSLFGELTDDLRVLAGATYIKAEQSKTANPASEGQDAPGVPRRQANLGLSWD TPFVQGLTLDGRWIYTGAAYLDTTNDLKVPHWNRVDVGASYAFQVAGKPLVARANLENLLAKDYWTASNGYMTVSSPRTLSLSLTADF
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site