Pseudomonas sp. M1, PM1_RS29360
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Biological Process | GO:0055085 | transmembrane transport |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01786
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Molecular Function | GO:0015232 | heme transmembrane transporter activity |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01785
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Biological Process | GO:0015886 | heme transport |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01785
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Molecular Function | GO:0022857 | transmembrane transporter activity |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01786
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Cellular Component | GO:0019867 | outer membrane |
Inferred from Sequence Model
Term mapped from: InterPro:SM00965
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| NCBIfam | TIGR01786 | JCVI: TonB-dependent hemoglobin/transferrin/lactoferrin family receptor | IPR010949 | TonB-dependent haemoglobin/transferrin/lactoferrin receptor | 125 | 855 | 0.0 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 302 | 324 | - |
| Gene3D | G3DSA:2.40.170.20 | - | IPR036942 | TonB-dependent receptor-like, beta-barrel domain superfamily | 261 | 857 | 0.0 |
| Gene3D | G3DSA:3.55.50.30 | - | - | - | 33 | 134 | 4.3E-25 |
| NCBIfam | TIGR01785 | JCVI: TonB-dependent heme/hemoglobin receptor family protein | IPR011276 | TonB-dependent haem/haemoglobin receptor | 122 | 854 | 9.3E-125 |
| SUPERFAMILY | SSF56935 | Porins | - | - | 125 | 854 | 5.86E-123 |
| CDD | cd01347 | ligand_gated_channel | - | - | 141 | 857 | 2.07549E-102 |
| Pfam | PF07715 | TonB-dependent Receptor Plug Domain | IPR012910 | TonB-dependent receptor, plug domain | 135 | 245 | 1.7E-25 |
| PANTHER | PTHR30069 | TONB-DEPENDENT OUTER MEMBRANE RECEPTOR | IPR039426 | TonB-dependent receptor-like | 111 | 856 | 5.3E-114 |
| Gene3D | G3DSA:2.170.130.10 | - | IPR037066 | TonB-dependent receptor, plug domain superfamily | 138 | 260 | 1.1E-32 |
| SMART | SM00965 | STN_2 | IPR011662 | Secretin/TonB, short N-terminal domain | 62 | 113 | 3.4E-13 |
| Pfam | PF00593 | TonB dependent receptor | IPR000531 | TonB-dependent receptor-like, beta-barrel | 345 | 855 | 7.0E-63 |
| Pfam | PF07660 | Secretin and TonB N terminus short domain | IPR011662 | Secretin/TonB, short N-terminal domain | 63 | 112 | 1.0E-7 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.