Pseudomonas sp. M1, PM1_RS28865
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. M1 PM1contig_003, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCATGAACGTCGCCAAGCAGGTCACCAACGGCGCCGTGCCCATGGGCGCGGTGATCGCCAGCAGCGAAATCTACGACACCTTCATGAACCAGAACCTGCC GGAGTACGCGGTGGAGTTCGGCCATGGCTACACCTACTCCGCGCACCCGGTCGCCTGCGCCGCCGGCATCGCCGCGCTGGACCTGCTGCAGAAGGAAAAC CTGATCCAGCAGTCCGCCGAGCTGGCGCCGCACTTCGAAAAAGCCCTGCACGGCCTCAAGGGCGCGAAGAACGTCATCGACATCCGCAACTGCGGGCTGG CCGGCGCCATCCAGATCGCCGCCCGCGACGGCGACGCCATCGTGCGCCCGTTCGAAGCCAGCATGAAGCTGTGGAAGGAAGGCTTCTACGTGCGCTTCGG CGGCGACACCCTGCAGTTCGGGCCGACCTTCAACGCCAAGCCCGAAGACCTCGACCGCCTGTTCGACGCGGTCGGCGAAGCGCTGAACGGGGTGGCGTAA
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| DNA Sequence for Gene |
>PM1_RS28865
GTGAGCGAGCGTCCCAAGGCCGTGCCGACGGTGCAGATCGACAACGACAAGGTCCTGGTCACCGAGTGGCGCTTCGCCCCGGGAGCGGAGACTGGCTGGC ACCGCCACGGCATGGAATACGTGGTGGTCCCGGTGACCGGCGGCGAACTGCTGCTGGAAACCCCCGAGGGCGAGCGGCGCGCGCCGCTGGTCCTGGGCCA GAGCTACACCCGCCAGATCGGCACCGAGCACAACGTGATCAACCCCTGCGACCACGAAGTGGCCTTCATCGAGATCGAGCTCAAGCAACACTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCCGCGGGCCCGCGCGTAGGCATGCCGGTTCGGCCGGGCTTACCCTGGCCGTCCCGGCGAGCCTCGCGGCCCACCCAACACACCGAACAATCCCCCTCT CCCGCTTGCGGGAGAGGGCTGGGGAGAGGGGCTCTTCAAGCTCCCGCCCTCCACCCACTCAGCGAGAAGAGACAAGACGATGACCATCATCAAGCACCTG ATCGGCGGCGAGCTGATCGCCGACACCGGCCGCACCGCCGACGTCTTCAACCCGTCCACCGGCGAGGCCGTGCGCAAGGTCCCGCTGGCCGACCGCGAAA CCATGCAGCAGGCCATCGACGCCGCCAAGGCAGCCTTCCCGGCTTGGCGCAACACTCCGCCGGCCAAGCGCGCCCAGGTGCTGTTCCGCTTCAAGCAACT GCTGGAAGCCAACGAAGAGCGCATCGTCAAACTGATCAGCGAAGAACACGGCAAGACCATCGAAGACGCCGCCGGTGAACTCAAGCGCGGCATCGAGAAC
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| Amino Acid Sequence |
>cupin
MSERPKAVPTVQIDNDKVLVTEWRFAPGAETGWHRHGMEYVVVPVTGGELLLETPEGERRAPLVLGQSYTRQIGTEHNVINPCDHEVAFIEIELKQH
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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