Pseudomonas sp. M1, PM1_RS25560

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. M1 PM1contig_003, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GCATCCATCCGGCCGTGGCCGCGCAGCCGCGCCTGCTGGACAACGTCTGGCCGCAGCTCAAGCCGCTGCTCTGATCGCCGGGCTGTCGGAAGGCTTCCCC GCGCGGGGGCTTTCCGCTATGTTTGCGCACCCTTCAGGAGCCGCCATGTCCCGCCCCGCCTGGACCCTCTTCGCCTACCAGCTGATCGAACCCGATTCCC AGCTCGATCTGTTCGCCTGCCGCGAGGTGCGCGTGCATCTCGTCGCCCGGCAGCTGGAGCTCGGCTCCCCCGCGGACCGCACCCTCTGCGGCGGCCTGCT GCCGGCGCAACCGCTCTGGCGCGAGGCCCGGCGACCGCAGCTGCGCGACCGGCGGCTGTGCCCGGAATGCCTGAAACGCCTGGAACAGGAAAAACGCGGG CAACGATTTTCCTGGGTATTGTGAACTCTCCCGGAAAATAGGGTCTGAGTGGTACACTACCGCCCCCTCTGTCAACTGTGCTCTCGCCAAGGATCTCCGG
DNA Sequence for Gene
>PM1_RS25560
ATGTTGTCGCGTGTTATCGCCGCCTGCTCGCTGTCTTTTGCCGCGCTGCTCTCGGCCGGCCCCGTTTCCGCCCTCGAGCTGCCGCTGCCGGCGCCCGGCG AGGATATCGTCGGCCAGGTGCAGGTCATCAAGGCCAAGTACGAAGACACCTTCGCCGACCTCGGCCAGACCTATGACCTGGGCTACCAGGAAATGCTCGC CGCCAACCCGGGCGTCGACGCTTGGCTGCCCGGCGTGGGCACCGAGGTCATCATCCCGACGCGCTTCATCCTGCCGCCGGGCCCGCGCGAAGGCATCGTG ATCAACATCGCCGAGTACCGCCTGTACTACTTCCCCAAAGGCAAGAACGTGGTCTACACCTACCCGCTGGGTATCGGCCGCGAGGGCTGGGGCTCGCCCA TCGCCCACACCAGCATCGTCGCCAAGACCAAGGATCCGGCCTGGTACCCGCCGGCGTCGATCCGCGCCGAGCACGCCGCCGACGGCGACCCGCTGCCGAC CGTGGTGCCGCCGGGGCCGGACAACCCGCTGGGCCCGTTCAAGATGTCGCTGGGCGTTCCCGGCTACCTGATCCACGGCTCGAACAAGAAGTTCGGCATC GGCACTCGCACCAGCCACGGTTGCTTCCGCATGTACAACGGCGACGTGACCGAGCTGTTCCCGATGGTGCCGGTGGGCACTTCGGTGCGCATCATCAACG AGCCGTACAAGTTCGGCCGCAGCGAAGGCAAGATCTACCTCGAGGCCCATACGCCGATCGACGACCACGGCAACCCCTCGGTCGTGGACAAGCACACCGC AGTGATCAATGCGCTGCTCAAGCGCGAAGACATCGCCAACCAGATGCAGATGGACTGGAACGTGGTGCGCGAAGTGGTGGCGGCCGAAGACGGCCTGCCG GTGGCCATCGCCATGCCACAGCAGCCCGGCTCTTCCGTGGCCGCCAGCGAGAACACCACCGTGCAGATGCCCTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
CGCCTGCGCCGTTGTGCCGAGCCCGCCGACCGCAAGGTCCGCGGGCTTTTCATTGCCTAGGAGAAAGTCCGGGCAATAAAAAAGCCGACCTCGAGAGGTC GGCTTTTCGAACAGATCCGAGGATCTATTACTTGCGGCTGGCTTTGTCCAGCATACGCAGAGCGCGCTCGTTAGCCTCGTCAGCAGTCTGCTGGGCTTTC TGAGCAGCGGCCAGAGCTTCGTCAGCGTGACGATAGGCTTCGTCAGCGCGGGCTTGGGCACGGGCAGCGGCGTCTTCAGTAGCGGTCAGACGGGCTTCGG TTTCTTTCGAGTGGCTGCTGCAACCGGTGGCCAGAACAGCAGCCAGAGCCAGAGCAGAGAATTTCAGAACGTTGTTCATCGTGTTCCCCTTAAGGTGGAC ATTTCCATTAAAGCAATTCCCCATGGGACTGGGAAATTAGCCGGACTACATAGTACTCATTACTTGTAGTAAGTAAACTGACCAAGCGCAAGTACGGCAC
Amino Acid Sequence
>transpeptidase
MLSRVIAACSLSFAALLSAGPVSALELPLPAPGEDIVGQVQVIKAKYEDTFADLGQTYDLGYQEMLAANPGVDAWLPGVGTEVIIPTRFILPPGPREGIV INIAEYRLYYFPKGKNVVYTYPLGIGREGWGSPIAHTSIVAKTKDPAWYPPASIRAEHAADGDPLPTVVPPGPDNPLGPFKMSLGVPGYLIHGSNKKFGI GTRTSHGCFRMYNGDVTELFPMVPVGTSVRIINEPYKFGRSEGKIYLEAHTPIDDHGNPSVVDKHTAVINALLKREDIANQMQMDWNVVREVVAAEDGLP VAIAMPQQPGSSVAASENTTVQMP
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site