Pseudomonas sp. M1, PM1_RS22900

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. M1 PM1contig_003, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CCCCCGGCCTCTATGCGCGCATCAAGCTGGTCGGCTCCGGCACCTACGACGCCGCGCTGATCAAGGACGAAGCGGTCGGCACGGACCTTGGCAAAAAGTT CGTGCTGGTGGTCGGCGCCGACAAGAAGGTGGCCTACCGCGCCATCGAGCTGGGGCCGAAGCTGGAGGGCCTGCGCATCGTCCGCAGCGGCCTGGCCAAG GGCGACCGCATCGTGGTCAACGGCCTGCAGCGCGTGCGCCCCGGCGCCGAGGTGGATGCCCAGGGTGTGCCCATGGCCAGTCCGGACACCCTCGCCGCCC TCGCCCGCTCGCGCCAGGCGGTGGAAGACAGCGAGCCGCCGAAGGTCGCCGAACAGTCGCCGGGCAAGCCCAGCCGCATCTGACGACGACCCGCCCCTGA GCGGGGCACATCGACAACGCAGTACCCGGCCCTGGCCCCACCCAGGGTCGCGGGTGACCTTTTGCCCAGGGTTTAGCGCCCCGCGCGCCAGGAACGAACC
DNA Sequence for Gene
>PM1_RS22900
ATGAACTTCTCGCAATTCTTCGTGCAGCGGCCGATCTTCGCCGCCGTGCTCTCGCTGATCATCCTGATCGGCGGGGCCATCTCGCTGTTCCAGTTGCCGA TCAGCGAATACCCCGAAGTGGTGCCGCCCACCGTGGTGGTGCGCGCCACCTTCCCCGGCGCCAACCCCAAGGTGATCGGCGAGACCGTCGCCGCGCCCCT GGAGCAGGCCATCACCGGCGTCGAGAACATGCTCTACATGTCCTCGCAGTCCACCGCCGACGGCAAGATGACGCTGACCATCACCTTCGCCCTGGGCACC GACCTGGACAACGCCCAGGTACAGGTGCAGAACCGCGTGACGCGCACCGAGCCGAAGCTGCCCGAAGAGGTCACCCACATCGGCATCACCGTCGACAAGG CCTCGCCCGACCTGACCATGGTCGTGCACCTGACCTCGCCGGACAACCGCTACGACATGCTCTACCTGTCCAACTACGCCATCCTCAACATCAAGGACGA GCTGGCGCGCCTGGACGGCGTGGGCGACGTGCAGCTGTTCGGCATGGGCGACTACTCGCTGCGCGTGTGGCTGGACCCGAACAAGGTGGCCTCGCGCAAC CTGACCGCCACCGACGTGGTCAACGCCATCCGCGAGCAGAACCGCCAGGTCGCCGCCGGCGCCCTCGGCGCGCCGCCCGCGCCCAGCGCCACCAGCTTCC AGCTGTCGATCAACACCCAGGGCCGCCTGGTCAGCGAGGAAGAGTTCGAGAACATCATCATCCGCAGCGGCCCTGACGGCGAGATCACCCGCCTGAAGGA CATCGCCCGTATCGAACTGGGCTCCAGCCAGTACGCCCTGCGCTCGCTGCTGGACAACCAGCCGGCGGTGGCCATCCCGATCTTCCAGCGCCCCGGCTCC AACGCCATCGCCATCTCCAACGAGGTGCGCGAGAAGATGGCCGAACTGAAGAAGGCCTTCCCCCAGGGCGTGGACTACTCCATCGTCTATGACCCGACCA TCTTCGTCCGCGGCTCCATCGAAGCGGTGGTGCACACCCTGTTCGAAGCGCTGATCCTGGTGGTGCTGGTGGTGGTGCTGTTCCTGCAGACCTGGCGCGC CTCGATCATCCCGCTGGCCGCCGTGCCGGTGTCGCTGATCGGCACCTTCGCGGTGATGCACGCCTTCGGCTTCTCGCTCAACGCGCTGTCGCTGTTCGGC CTGGTGCTGGCCATCGGCATCGTGGTGGACGACGCCATAGTGGTCGTAGAGAACGTCGAGCGGAACATCGGCCTCGGGTTGACGCCGATCGAGGCCACCA AGCGCGCCATGAAGGAAGTGACCGGGCCGATCATCGCCACCGCCCTGGTGCTGTGCGCCGTGTTCGTGCCGACCGCGTTCATCTCCGGCCTCACCGGGCA GTTCTACCGGCAGTTCGCGCTGACCATCGCGATCTCCACGGTGATCTCCGCATTCAACTCGCTGACCCTGTCGCCGGCGCTGGCCGCCGTGCTGCTCAAG GGCCACCACGAGCCCAAGGACCGCTTCTCGCTGATCCTCGACAAGCTGCTGGGCAGCTGGCTGTTCCGCCCGTTCAACCGCTTCTTCGACCGCGCCAGCC ATGGCTACGTCGGCACCGTCACCCGCGTGCTGCGCGGCAGCTCCATCGCCCTGTTCATCTACGCCGGGCTGATCGCCCTCACCTACCTGGGCTTCTCCAG CACCCCGACCGGCTTCGTGCCGCAACAGGACAAGCAGTACCTGGTGGCCTTCGCCCAGCTGCCCGACGCGGCGACCCTCGACCGCACCGAGGCGGTGATC AAGCGCATGTCGGAAATCGCCGGCAAGCACCCGGGCATCGAGCACACCGTGTCCTTCCCGGGCCTGTCGATCAACGGCTTCACCAACAGCCCCAACAGCG GCATCGTCTTCACCCCGCTGAAGGACTTCGACCAGCGCAAGGGCCCGGGCATGTCCGCCGGCGAGATCGCCGCCGAGCTGAACAAGCAGTTCGCCGACAT CCAGGACGCCTACATCGCCATCTTCCCGCCGCCGCCGGTACAGGGGCTGGGGACCATCGGCGGCTTCCGCGTGCAGGTCGAGGACCGCGGCAGCCTGGGC TACGAGGAGCTCTACACGCAGACCCAGAACATCCTCGCCAAGGCCCGCGCGCTGCCCGAGCTGAACCCCATGTCGGTGTTCACCAGCTACCAGGTGAACG TGCCGCAAGTGGACGCCGCCATCGACCGCGAGAAGGCCAAGACCCACGGCGTGGCCATCAGCGACATCTTCGACACCCTGCAGGTGTACCTGGGCTCGCT GTACGCCAACGACTTCAACCGCTTCGGCCGCACCTACCAGGTCAACGTCCAGGCCGACCAGAACTTCCGCCTGGACCCGGAACAGATCGGCCAGCTGAAG GTGCGCAACAACCTGGGTGAAATGGTCCCCCTGGCCACCTTCATCAAGATCAGCGACACCTCCGGCCCCGACCGGGTGATGCACTACAACGGCTTCATCA CCGCCGAGATCAACGGCGCCGCGGCGCCCGGCTACAGCTCCGGCCAGGCCGAGGCGGCGATGGAGAAACTGCTCAAGCAGGAACTGCCCAACGGCATGAC CTACGAGTGGACCGACCTGACCTACCAGCAGATCCTCGCCGGCAACACCGCGGCCTTCGTCTTCCCGCTCTGCGTGCTCCTGGCCTTCCTGGTGCTGGCC GCGCTGTACGAGAGCTGGGGCCTGCCGCTGGCGGTGATCCTGATCGTGCCGATGACCCTGCTGTCGGCCATCGGCGGCGTGATCGTCGCCGGCGGCGACA ACAACATCTTCACCCAGATCGGCCTGATCGTGCTGGTGGGCCTGGCGTGCAAGAACGCCATCCTCATCGTCGAGTTCGCCAAGGACAAGCAGGAAGAAGG CATGGACCGCGTCGCCGCCGTGCTGGAGGCCTGCCGCCTGCGCCTGCGGCCGATCCTGATGACCTCCATCGCCTTCATCATGGGCGTGGTGCCGCTGGTG CTGTCCACCGGCGCCGGCGCCGAGATGCGCCATGCCATGGGCGTCGCGGTGTTCTCCGGGATGCTCGGGGTGACCTTCTTCGGCCTGCTGCTGACACCGG TGTTCTACGTCCTCATCCGCCGCTTCATGGAAGCCCGCGAAGCGAAGAAACAAGCCCGCCTGACCCACGAGGCCAGCCACGCATGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
ACCTGAAACACTTCGCCCCGGCGCTGCTGGCCCTGAGCCTCAGCGCCTGCATGGTCGGCCCCGACTACAAGCAGCCGGACACCGCGCCGGCCAAGCTCGA AACCGGCGCAGCGGTCTTCGACCGCAGCCGTTTCGAGGACGCCTGGTGGAAACAGTTCGACGACCCGGTGCTGAGCCAGCTGGTCGACCAGGCCCTGCAG GAAAACCGCGAGCTGCGCGTGGCCTACGACCGCGTGCTGGCCTCGCGGGCGATCCGCGACGACGTCTCCAACGACCGCTTCCCCACCGTGACCAGCCGCG TCTCCTCGGAGATCGGCAAGGGCCAGGTGCCCGGGCAGACCGAGGACCGCGTCAACCAGGAGCGCTACGACCTGGGCCTGGACATGATCTGGGAAGTCGA CCTGTTCGGCCGCGTGCGCCGCGAGCTGGAATCGGCCGACGCCCAGAGCCAGGCCGCCCAGGCCGACCTGCAGCAGCTGCAGGTCAGCCTGGTCGCCGAG
Amino Acid Sequence
>multidrug efflux RND transporter permease subunit
MNFSQFFVQRPIFAAVLSLIILIGGAISLFQLPISEYPEVVPPTVVVRATFPGANPKVIGETVAAPLEQAITGVENMLYMSSQSTADGKMTLTITFALGT DLDNAQVQVQNRVTRTEPKLPEEVTHIGITVDKASPDLTMVVHLTSPDNRYDMLYLSNYAILNIKDELARLDGVGDVQLFGMGDYSLRVWLDPNKVASRN LTATDVVNAIREQNRQVAAGALGAPPAPSATSFQLSINTQGRLVSEEEFENIIIRSGPDGEITRLKDIARIELGSSQYALRSLLDNQPAVAIPIFQRPGS NAIAISNEVREKMAELKKAFPQGVDYSIVYDPTIFVRGSIEAVVHTLFEALILVVLVVVLFLQTWRASIIPLAAVPVSLIGTFAVMHAFGFSLNALSLFG LVLAIGIVVDDAIVVVENVERNIGLGLTPIEATKRAMKEVTGPIIATALVLCAVFVPTAFISGLTGQFYRQFALTIAISTVISAFNSLTLSPALAAVLLK GHHEPKDRFSLILDKLLGSWLFRPFNRFFDRASHGYVGTVTRVLRGSSIALFIYAGLIALTYLGFSSTPTGFVPQQDKQYLVAFAQLPDAATLDRTEAVI KRMSEIAGKHPGIEHTVSFPGLSINGFTNSPNSGIVFTPLKDFDQRKGPGMSAGEIAAELNKQFADIQDAYIAIFPPPPVQGLGTIGGFRVQVEDRGSLG YEELYTQTQNILAKARALPELNPMSVFTSYQVNVPQVDAAIDREKAKTHGVAISDIFDTLQVYLGSLYANDFNRFGRTYQVNVQADQNFRLDPEQIGQLK VRNNLGEMVPLATFIKISDTSGPDRVMHYNGFITAEINGAAAPGYSSGQAEAAMEKLLKQELPNGMTYEWTDLTYQQILAGNTAAFVFPLCVLLAFLVLA ALYESWGLPLAVILIVPMTLLSAIGGVIVAGGDNNIFTQIGLIVLVGLACKNAILIVEFAKDKQEEGMDRVAAVLEACRLRLRPILMTSIAFIMGVVPLV LSTGAGAEMRHAMGVAVFSGMLGVTFFGLLLTPVFYVLIRRFMEAREAKKQARLTHEASHA
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site