Pseudomonas sp. M1, PM1_RS30290

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. M1 PM1contig_004, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CACGCCTGGCTGGACCAGCGTCCGATCCTGGTGTTCGACGAATGGGCCGCCGACCAGGACCCGACCTTCCGCCGCATCTTCTACACCGAGCTGCTGCCCG ACCTGAAGCGCCAGGGCCGGACACTCATCGTCATCTCCCACGACGACCGCTATTTCGACGTTGCCGACCAGTTGATGCGCATGGAGCAGGGGCAACTGGT CAGCGAGCGGGCCCTGGCCTGAGGGCCGGGCCACAGCCCTCCCCGGCCGGATGCCTCGGGCGCCAAGGCGGCGCCCGAGGCAGACGATAGCAGAGCGCCA CTTTTTTCTAAATTCCGCTGCGCCTGGTTCGTTATCAGGGCGAATGCCATCAGAGCAACTGCATCTTCATAAAAATAATGCTTCTCATCAGCATATAGAT TCTGCATCCACCATAAGGAGTCCATCCCCCCATGTCCCGCCCCCGCATCAGCCGAAGCCGGCTGGCCAAGGCCATCCACCCCGTTGCCCCTCAGCGCCGG
DNA Sequence for Gene
>PM1_RS30290
CTGTTGCCCGGCGCCCTGCTCGCCGCCCTGCTGAGCGCCGGCGTGGCCCACGCCGAGCCGGTGAAGCTGGACATTCCCGCCCAGTCGCTGGCCAGCGCCC TGCGCGAGTTCGGCAAGCAGGCCGGCCTGGAAGTCCTCTACAGCCCGGACGTGGTCAAGGGCGTGAAGTCCAGGGGAGTCAGCGGCTCGCTGGAGCCCGA GGAAGCGCTGGACACGCTGCTGCAGGGCAGCGGCATCTCCTATCACCGCGAAGGCAATACCATCACCCTCAGCGCGGTCACCTCCGACCTCCTGCAGATG GGCGCGGTGACCATCGAGGGCCGCGGGCTGGGCGCCACCACCGACGGCACCGGCTCCTACACCACCGGCCTGGTGTCGAGCATCACCAAGCTGCCGCTGA CGCCGCGGGAAACCCCGCAGACGGTCACCGTGATGAGCCGCCAGCAGATGGACGACTTCGGCCTCAACAGCATCGACGACGTCATGAAGCACACCCCGGG CGTCACCGTGCAGAAGCTCGACAGCGAGCGCAGCGCCTACTGGGCGCGCGGCTCGCAGATCACCAACTTCCAGTACGACGGCATCCCCTCCTACCTGGAT ACCGCCTATGCCGACGGCAAGACCCTCAGCGACATGGCCATCTACGACCGCATCGAGGTGATCAAGGGCGCCACCGGCCTGCTCACCGGCAGCGGCCAGC CCGGCGCGGCCCTGAACCTGATCCGCAAGCGCCCGACCCGCAGCTTCGCCGGCCACGTGTCGCTGGGCGCCGGCTCCTGGGACAACTACCGCGGCGAGCT GGACGTCGGCGGCCCGCTGACCGACGAAGGCAACATCCGCGGACGCTTCGTCACGGCCTACCAGGACAAGAACTCCTACATGGACCGTTACGAGCAGAAG AACTCCACCTACTACGGCATCCTCGAAGCCGACCTGACGCCGAGTACCCTGTTCAGCATCGGCATGGACTACCAGGACACCACCCCCACCGCCTCCAACT GGGCCGGGGTGCCGCTGTTCTACTCCGACGGTTCCAAGACCGACTTCCCGCGATCCTTCAACCCCGGCGCCAACTGGAGTTCCTGGGAGCAGTACAACCG CACGGTCTTCGCCACCCTCGAGCACACGCTGGAGAACAACTGGACGCTCAAGCTGCACCTGAACCACCAGGAAAGCGGCTACCACGCCCCACTGGGCTCC GCCGGCGGCGGCTACCCGGACCCGGTCACCGGCGAAGGCGGCATCCTCTTCCACGGCAAGTACACCGGCGACACCCGCCGCGACTCGGTGGACATGTACG CCTCCGGCCCCTTCGAACTGTTCGGCCGCGAGCACGAGGCGGTGTTCGGCTACAACGCCTCGCGCTCGGTGACCAAGGGCAACGGCTACTGGGACTACCC CACCCCCTACGACCCCAGCATCCCCAACATCTTCACCTGGAACGGCAAGTTCCCCGAGCCGGACTGGGGCTCCAAGGCCAACCTGAAGAACTACTCGCAG CTGCACCAGTCCGGCTACTACGGCACCGTGCGCCTGAAGCCGACCGACGACCTGGCGCTGATCGCCGGCGCCCGCGTGGCCGACTACCACGACAGCGCCG AGCAGATCTCCGACAGCCAGTACGGCTACTACGTCACCCCGCAGAGCACCCGCAAGAGCGGCGTGGTGGTGCCCTATCTCGGCGCTGTGTACGACCTGAA CGACAACTACTCGGTGTACGCCAGCTACACGGGCATCTTCCAGCCGCAGCAACTGCGCGACATCAACGACAAGCCGCTGGAGCCCGAAGAAGGCAAGAGC TACGAGCTGGGCGTGAAGGGCGAGTTCTACGACGGCCTGCTCAACGCCAGCTTCGCGGTGTTCGAGTCGCAGCAGGACAACCTCGCAGTCGAGACCAGCG ACGTCACCCCCTCCGGTGGCATCGCCTACGAAAGCGCCGACGGCACCAAGACCCGCGGCTTCGAGGCGGAGATTTCCGGCGAACTCCTGCCGGGCTGGCA ACTGCAGGCCGGCTACACCCACGCGGTCAGCCGCGACAAGGATGGCCACCGCATTCGCACCCTCAACCCGGACCAGCTGTTCCGTCTGTACACCACCTAC CAGCTGCCGGGCGAGCTGAACCAATTCACCGTCGGCGGCGGCGCCAGCTACCAGAGCAAGATCTGGACGGACGTCAGCGACCAGAACTACGAAACGGTGA AATACACCCAGGGCAGCTACTGGCTGGTGGACCTGATGACGCGCTACCAGGTCACCGACAACCTGTCGGCCACGCTCAACCTGAACAATGTGTTCGACAA GAAGTACTTCAGCAACCTCGGGTTCTACAACACCGGCTACTACGGCGAGCCGCGCAACCTGATGCTCACCACCCGCTGGGACTTCTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCGAACCGCAGGCCGTCGGCCTGAACGACAACGCCGTTTCCCTTCACGGGGAAACGGCGTTTTCGTGTCTGCGCGACAGGTGATGATGGGTATCGCTTCG CTCAACGCCATCCTACGCAGGATGACTCCGGACTCACCGCCTGCTCCGAACGGCTCCCTCTCCCTTCAGGGAGAGGGCTGGGGAAAGGGTTGCGGACTGT CTTGCCGGCTGCGCCGAGGCGCTTTCCGTAGGATGGGTTGAGCCTTGGCGAAACCCATGCGGCCACGGTGATGGGTATCGCTTCGCTCAACGCCATCCTA CGGGTTGTGTTTGCCGGGGGCGTAGGAGCGGACTCTGTCCGCGATTGGACTCGCCGCCCGCTCCGAGGGCACCCTCTCCCTCCGGGAGAGGGCTGGGGTG AGGGAAGCAACCGGCAAAACGCTCACCCCACCAGCCAACGATCCAGCCAGGCAGCCTGGCTGGCATGGATGGCGGCCACCTCTCCCACCAGCCCGTGCAT
Amino Acid Sequence
>ligand-gated channel
MLPGALLAALLSAGVAHAEPVKLDIPAQSLASALREFGKQAGLEVLYSPDVVKGVKSRGVSGSLEPEEALDTLLQGSGISYHREGNTITLSAVTSDLLQM GAVTIEGRGLGATTDGTGSYTTGLVSSITKLPLTPRETPQTVTVMSRQQMDDFGLNSIDDVMKHTPGVTVQKLDSERSAYWARGSQITNFQYDGIPSYLD TAYADGKTLSDMAIYDRIEVIKGATGLLTGSGQPGAALNLIRKRPTRSFAGHVSLGAGSWDNYRGELDVGGPLTDEGNIRGRFVTAYQDKNSYMDRYEQK NSTYYGILEADLTPSTLFSIGMDYQDTTPTASNWAGVPLFYSDGSKTDFPRSFNPGANWSSWEQYNRTVFATLEHTLENNWTLKLHLNHQESGYHAPLGS AGGGYPDPVTGEGGILFHGKYTGDTRRDSVDMYASGPFELFGREHEAVFGYNASRSVTKGNGYWDYPTPYDPSIPNIFTWNGKFPEPDWGSKANLKNYSQ LHQSGYYGTVRLKPTDDLALIAGARVADYHDSAEQISDSQYGYYVTPQSTRKSGVVVPYLGAVYDLNDNYSVYASYTGIFQPQQLRDINDKPLEPEEGKS YELGVKGEFYDGLLNASFAVFESQQDNLAVETSDVTPSGGIAYESADGTKTRGFEAEISGELLPGWQLQAGYTHAVSRDKDGHRIRTLNPDQLFRLYTTY QLPGELNQFTVGGGASYQSKIWTDVSDQNYETVKYTQGSYWLVDLMTRYQVTDNLSATLNLNNVFDKKYFSNLGFYNTGYYGEPRNLMLTTRWDF
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site