Pseudomonas syringae B576, NG81_RS04405
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae strain B576 contig_8, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCTCGGGTCCATATCACTTATGACGTGGACATCGGCGATGCTCAGGAAAAGAAAGAGCTGCCATTCGTTGTAGGCGTTCTGGGCGATTTCTCCGGCAACC CGCTGGAGCCGCTGCCCAAGCTCAAGGATCGCAAGTTCATCTTCATCGACCGCGACAATTTCAATGGCGTCCTGAAAGGCATCAAGCCGCGCCTGGCGTA TCGCGTCGACAACACCCTGGCAAAAGACGGTACCCAACTCGGTGTCGAGCTGAACTTCAATGCGCTGGAAGACTTCGAGCCGCAGAACGTCGTGCGTCAG GTCGAGCCGCTGCGCAAGCTGCTGGAAGTGCGTAACAAGCTGGCTGACCTGCGTAACAAGATGGGTGGCAACGACAAGCTTGAAGAACTGCTGATGGACG TGTTGCAGAACACTGAAAAGCTGAAAACCCTGGGCAAGGAATTCGGCCGTGAAGCCGCCGCTCCTGCCACCGACAACAAAGAGTAAGGAGGAGCCTGACG
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| DNA Sequence for Gene |
>NG81_RS04405
ATGACCGATAAGCAACCCGTGACTCAGCAGGACAGCGCTCTGGTTGAAGTTGAAAACTTCGCCCCGCAATCTTCCTTGCTCGACAGCATCATTTCCGAAA GCCGCGTTGCACGCTCCGAAACCGAGCGCACCCGTACCCGCGATCTGATCGGCGAACTGGTGGCCCAGGTACTTGAAGGCGAGATGACGCCGAGCAAGGA CCTGATTGCCGTGCTCGACGCGCGCATCGCCGAGATCGATTCGATGCTCTCCGAGCAAATGAACGAAATCATGCACGCTCGTGAATTCCAGCAACTGGAA GCCTCCTGGCGCGGCCTGAAATATCAGGTTGACCAGACCGAGACCAGCACCACGCTGAAGATTCACCTGCTCAACGCGTCGAAAAAAGACCTCGTGCGTG ACCTCAAGGCGTCGTCCGAATTCGACCAGAGCGCACTGTTCAAGAAGATCTACGAAGAAGAGTACGGCACCTTCGGTGGCGCGCCGTTCGGCATGCTGCT GGGTGACTACGAGTTCAACCGCAGCCCGGAAGACATGTACCTGCTGGAAGAGATCTCCCACGTGGCAGCCGCCGCCCACGCGCCGTTCATTTCGGCTGCA TCGGCCGAGCTGTTCGGCTGGGACTCGTTCACCGACATGGCCGGCCCTCGCGACCTGGCGAAGATCTTCGACACCGTCGAATACGCCAAGTGGAAGTCGT TCCGCGCCTCTGAAGACTCCCGCTACGTCGGCCTGACTCTGCCGCACGTGCTGGGTCGTCTGCCGTATGGCCCGGATACCACGCCTGTCGAAGAATTCAA CTTCGTCGAAAGCGTCGATGGCCGTGACCACAACAAATACCTGTGGATGAACGCTGCCTACGCGCTGGGCACCCGCGTGACCGATGCGTTTTCCCGCTAC GGCTGGTGCGTGGCGATCCGTGGTGTGGAAGGCGGTGGTCTGGTCGAAGGCCTGCCGACGCACACCTTCAAGACCGATGACGGTGAAATCGCGCTCAAAT GCCCGACTGAAATCGCCATCACCGACCGTCGCGAAAAAGAGCTCTCGGACCTCGGCTTCATTCCGCTGGTGCACTGCAAAGGCACCGACTACGCCGCGTT CTTCGGCACCCAGTCGACCCAGAAGCAGAAGCAGTACAACACCGACATTGCCAACGCCAACGCGCGTCTGTCGGCGCAACTGCAATACATCTTCGCGACC TCGCGTATCGCTCACTACATGAAAGCGATCATGCGCGACAAGATCGGCAGTTTTGCATCGCGTAAGGATGTCGAGCTGTTCCTCAACAAGTGGCTGTCCA GCTACGTGTTGCTGGATGATACCGCCAGCCAGGAAGCCAAGGCCAAGTTCCCGCTGCGCGAAGCGCGTGCCGAAGTGTTCGAAGTTCCTGGCAAGCCTGG CGTCTACAAGGCCGTGACTTACCTGCGTCCGCATTACCAACTGGATGAACTGACGGCATCGCTGCGTCTGGTCGCCGAATTGCCGCAATCGACTCGCGGC TGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCCAACAGTTAGCCAGGGAGGCAACATGAGTAGTCAACACAAGCTGTTGCCTTCATTGCTGGATCGATTGCTCGACGATCGTCCGCATCAGTCCGTGGAA TCGTCATCGCAACGATTGAGCTCGCTGGCCGACTACAAGGCCAGCATCGTTCGTGACCTGGAGATTCTGGTGAACACTCGCCAGTCTCTGGTCGCTGGCG AGCTGGAAGGTTTCGCTAATCTGAGCGGCACCATCCTCGACTACGGTATGCCCGACTTCACCAGTAAAAGCGTGCTCGACCCACAGGATCGTCTTTTGAT CCAGCGCCAGCTGGAAAAGGCCATCTCGGTGGGCGACCGACGCTTTCGCAGCGTGAAAGTCCAGTTGCTTGCACAACAGACCGGCCAACGCATGCTGACT TTTCGTGTGGACGCAGTACTGCGTCTGCAGGACATTTCGCGTCAGGTTTCTTTTGACGCCGTGCTGCAGGTCAACACTCAGGAATACAAAGTGCAGAACC
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| Amino Acid Sequence |
>type VI secretion protein EvpB
MTDKQPVTQQDSALVEVENFAPQSSLLDSIISESRVARSETERTRTRDLIGELVAQVLEGEMTPSKDLIAVLDARIAEIDSMLSEQMNEIMHAREFQQLE ASWRGLKYQVDQTETSTTLKIHLLNASKKDLVRDLKASSEFDQSALFKKIYEEEYGTFGGAPFGMLLGDYEFNRSPEDMYLLEEISHVAAAAHAPFISAA SAELFGWDSFTDMAGPRDLAKIFDTVEYAKWKSFRASEDSRYVGLTLPHVLGRLPYGPDTTPVEEFNFVESVDGRDHNKYLWMNAAYALGTRVTDAFSRY GWCVAIRGVEGGGLVEGLPTHTFKTDDGEIALKCPTEIAITDRREKELSDLGFIPLVHCKGTDYAAFFGTQSTQKQKQYNTDIANANARLSAQLQYIFAT SRIAHYMKAIMRDKIGSFASRKDVELFLNKWLSSYVLLDDTASQEAKAKFPLREARAEVFEVPGKPGVYKAVTYLRPHYQLDELTASLRLVAELPQSTRG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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