Pseudomonas syringae B576, NG81_RS25005
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae strain B576 contig_40, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCGAGCTTTTTCAGGAGTTGCTGGCTTGATCGAACCGTTTCCAGACATCAGGCAACAGGTTAAAAACATGCCGTTGGTGGCATGCCGCTTGATGACTGGT GCTGTCCGCTTGTAAACTACCGAGTCCGCTCGCCCATCCGGGCATCGCGCATCCGCATTTGCTACGAGGAATACCCATGGCCCGCGTAACCGTTGAAGAC TGCCTAGAACACGTGGATAACCGCTTTGAGCTGGTCATGCTCTCTACCAAGCGCGCCCGTCAACTGGCAACCGGCGGCAAAGAACCAAAGCTGGCCTGGG AAAACGACAAGCCTACCGTTATGGCCCTGCGTGAAATCGCGGCTGGCGTAATGGATTACTCTGTAATCGCAGAAGCTGAAATCGTTGAAGATGAGCCATT GTTCGCAGCGTTCGAGGACGAGTCCAACGAGGCCGTCTAAGCCTATGCCAGGTCGACGTAGTACGGCGCAGGGTAAAAGCCATTGGCAAGGGGTAGCGCC
|
|
| DNA Sequence for Gene |
>NG81_RS25005
TTGCCGAGCATAGACGCCCTCGCCGACAGACTGTCGGCCTACCTCGGCAAGGACCAGGTCAATCTGGTCCGCCGGGCGTATTTCTACGCCGAACAAGCCC ACGATGGCCAACGCCGTCGCAGCGGTGAAGCCTACGTCACCCATCCTCTTGCGGTGGCGAACATTCTTGCCGACATGCACATGGACCATCAGAGCCTGAT GGCTGCGATGCTGCATGACGTCATCGAAGACACCGGAATTGCCAAGGAAGCGCTCAGCGCCCAATTTGGCGAGACCGTCGCGGAACTGGTCGACGGGGTC AGCAAACTGACCCAGATGAATTTCGAGACCAAGGCCGAAGCCCAGGCGGAAAACTTCCAGAAAATGGCCATGGCCATGGCGCGCGACATTCGCGTCATTC TGGTCAAGCTCGCCGATCGCCTGCACAACATGCGCACGCTGGAAGTCCTGTCCGGCGAAAAGCGCCGGCGCATCGCCAAGGAAACCCTCGAAATCTATGC GCCCATCGCCAATCGGTTGGGCATGCACAGTGTGCGCATCGAATTCGAGGACCTGGGTTTCAAGGCGATGTACCCCATGCGCTCCTCGCGAATCAACCAG GCGGTCAAGCGCGCCAGGGGCAATCGCAAGGAACTGGTCAACAAGATCGAAGAGTCCCTGAGTCATTGCCTGGCCGTCGATGGCATCGAAGGCGACGTCA GTGGGCGGCAGAAACATCTGTATGGCATCTACAAGAAGATGCGCGGCAAGCGTCGCGCCTTCAACGAGATCATGGATGTCTACGCGTTCCGCATCATCGT CGACAAGGTCGACACCTGCTATCGCGTGCTCGGCGCTGTACATAATTTGTACAAGCCACTGCCCGGTCGCTTCAAGGATTACATCGCGATCCCCAAGGCC AACGGCTATCAGTCCCTGCATACCACCTTGTTCGGTATGCATGGCGTGCCTATCGAGATCCAGATTCGCACCCGCGAAATGGAAGAAATGGCCAACAACG GCATCGCAGCGCACTGGCTATACAAATCCAGCGACGACGAGCAGCCCAAGGGCACTCATGCTCGAGCCCGACAGTGGGTCAAGGGCGTGCTGGAAATGCA GCAGCGTGCTGGCAACTCCCTGGAATTCATCGAAAGCGTCAAGATCGACCTGTTCCCGGACGAAGTCTACGTTTTCACGCCCAAAGGCCGAATCATGGAG CTGCCCAAAGGCTCCACAGCGGTGGATTTCGCCTACGCGGTACACACCGATGTCGGCAACAGCTGCATTGCCTGCCGGATCAACCGCCGACTGGCGCCGC TTTCCGAACCGCTGCAAAGTGGCTCGACCGTCGAGATTGTCAGCGCCCCCGGCGCACGTCCGAATCCGGCCTGGCTGAACTTCGTCGTCACGGGCAAGGC GCGCACCCACATTCGTCACGCGCTCAAGCTGCAACGCCGCTCCGAGTCGATCAATCTGGGCGAGCGCCTGCTGAACAAGGTGCTCAACGGCTTTGAATGC AACCTCGACAAGATCGGTCAGGAGCGCATTCAACTGGTGCTCAACGAATACCGGGTCGAAGTGCTGGAAGACCTGCTCGAAGACATCGGCTTGGGTAATC GCATGGCTTATGTCGTTGCCCGCCGCCTGCTGGGCGAAGGCGATCAGTTGCCAAGCCCCGAAGGCCCGCTGGCGATTCGTGGCACCGAAGGTCTGGTGCT CAGCTACGCCAAATGCTGTACACCAATCCCGGGCGACCCGATTGTCGGCCACCTGTCTGCAGGCAAGGGCATGGTTGTGCACCTGGACAACTGCCGCAAC ATCAGCGAAATCCGCCACAACCCGGAAAAATGCATCCAGCTGTCCTGGGCCAAGGACGTGACGGGCGAATTCAACGTCGAGCTGCGTGTCGAACTCGAGC ATCAGCGCGGCCTGATCGCGCTGTTAGCCAGCAGCGTCAACGCGGCGGACGGCAATATCGAAAAAATCAGCATGGACGAACGCGATGGTCGCATCAGCGT GGTCCAACTGGTGGTCAGCGTGCACGATCGCGTGCACCTGGCTCGTGTGATCAAGAAACTGCGCGCTCTGACCGGTGTCACACGCATCACCCGGATGCGC GCGTAG
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GCCATCCCATTATCAGGAGTTCTCATGACCAAGACTGTCATCACCAGCGATAAAGCCCCTGCGGCCATCGGCCCTTACTCACAGGCCATCAAAGCTGGCA ATACCGTCTACATGTCCGGACAGATCCCGTTGGACCCGAGCACCATGGAACTGGTCGAGGGCATCGAAGCCCAGATCACTCAGGTTTTCGAAAACCTCAA GTCGGTTGCCGAAGCAGCGGGCGGATCTTTCAAGGACATCGTCAAACTGAACATCTTTCTGACCGATCTGGGCCACTTCGCCAAGGTCAACGAGCTGATG AGCGCCTACTTCACTCAGCCTTATCCGGCCCGCGCAGCTATCGGCGTTGCGGCCTTGCCGCGTGGCGCCCAGGTTGAAATGGACGCGATTCTCGTCATCG AATAAATCCCCGACGGAGCGTGCCTTGCGCTCCGTTCTCCCTGAAGGAAGGAATCCGTTATGCGCTCCGCGCTCGCCATCTCGCTGCTCGCCGTCATTCT
|
|
| Amino Acid Sequence |
>RelA/SpoT protein
MPSIDALADRLSAYLGKDQVNLVRRAYFYAEQAHDGQRRRSGEAYVTHPLAVANILADMHMDHQSLMAAMLHDVIEDTGIAKEALSAQFGETVAELVDGV SKLTQMNFETKAEAQAENFQKMAMAMARDIRVILVKLADRLHNMRTLEVLSGEKRRRIAKETLEIYAPIANRLGMHSVRIEFEDLGFKAMYPMRSSRINQ AVKRARGNRKELVNKIEESLSHCLAVDGIEGDVSGRQKHLYGIYKKMRGKRRAFNEIMDVYAFRIIVDKVDTCYRVLGAVHNLYKPLPGRFKDYIAIPKA NGYQSLHTTLFGMHGVPIEIQIRTREMEEMANNGIAAHWLYKSSDDEQPKGTHARARQWVKGVLEMQQRAGNSLEFIESVKIDLFPDEVYVFTPKGRIME LPKGSTAVDFAYAVHTDVGNSCIACRINRRLAPLSEPLQSGSTVEIVSAPGARPNPAWLNFVVTGKARTHIRHALKLQRRSESINLGERLLNKVLNGFEC NLDKIGQERIQLVLNEYRVEVLEDLLEDIGLGNRMAYVVARRLLGEGDQLPSPEGPLAIRGTEGLVLSYAKCCTPIPGDPIVGHLSAGKGMVVHLDNCRN ISEIRHNPEKCIQLSWAKDVTGEFNVELRVELEHQRGLIALLASSVNAADGNIEKISMDERDGRISVVQLVVSVHDRVHLARVIKKLRALTGVTRITRMR A
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|