Pseudomonas syringae B576, NG81_RS20995 (fliN)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae strain B576 contig_32, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GTACATCAACTCGGAAGTGAACCCGGCCATGGCCAACATCGTCGGGCCGAGCGAGGCCGTAGTGATTTCCACCTTCCACATCGAACTCGATGGCGGTGGT GGCGATCTGCACGTGACCATGCCGTACTCGATGATCGAGCCTATCCGCGAAATGCTCGATGCCGGTTTCCAGTCCGATCTGGACGACCAGGATGAGCGTT GGGTCAACGCGCTCAAGGAGGACGTGCTGGACGTCAACGTGCCGCTCACGACGACCATTGCCCAGCGCCAGTTGCCGTTGCGGGACATCCTGCACATGCG CCCTGGTGATGTGATTCCGGTGGAACTGAGCGACTCGCTGGTCATGCGAGCCAATGGCGTACCTTCATTCAAGGTCAAGCTTGGCTCGCACAAGGGCAAG ATGGCCCTGCAAGTAATCGAACCCATAGCGCGACGCTGACCTTTCTGGTCTGCGTCGGAAATTGTTGCGTAACTGAAATACTGCGTGCAGAGGACAACCG
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| DNA Sequence for Gene |
>NG81_RS20995
|fliN
ATGGCTGATGAAAACGATATGACGTCTGCTGAAGACCAGGCATTGGCCGATGAATGGGCTGCTGCCTTGGGCGAAGCTGGCGACAGTCAGGCTGATATTG ATGCGTTGCTGGCTGCGGACGCCGGGAATTCGGGTAGCCGGATGGCCATGGAAGAGTTTGGCAGCGTGCCGAAAAGCACTGGTCCGGTTTCTCTGGATGG TCCCAATCTGGATGTGATTCTCGACATTCCGGTATCGATCTCCATGGAAGTGGGCAGCACCGACATTAACATTCGCAACCTGTTGCAGCTCAACCAGGGC TCGGTGATCGAGCTGGATCGTCTGGCGGGCGAACCGCTGGATGTGCTGGTCAACGGCACATTGATCGCGCATGGCGAAGTGGTGGTGGTCAACGAAAAGT TCGGCATCCGTCTGACCGACGTGATCAGCCCGAGCGAACGCATCAAGAAGCTGCGCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GTGAGGCGCTGGCTGAGTGTTCTGCTGACCCTGCCATCGCTGGCCTGGGCCGCCGAACCCGCCGCTCAGGCGGCGCCTGCGCAGGTGGCCAACACGGTCT CCGGCGGCATGGGCGGGCAGGTGGTGCAACTGCTGTTCGGTCTGATCCTGGTGATTGGTCTGATCTTCGTGCTCGCCTGGCTGATGCGCCGGGTGCAGCG CGTCGGGCCGAACAGCAATCAGGTGATCGAGCTGGTGAGTTCGCGCGCACTGGGGCCGCGTGATCGGCTGGTGCTGGTGCAGATCGGCAATGAACAGGTG CTGCTGGGCATTACGCCCGGGCGAATCACGCCTCTGCATGTGCTCAAGGAGCCGGTGCAGGTGCCGGTGCGCGAGCAGGCCACCCCAGAATTCGCTCAGC GCCTTATGGAGCTGATGGGCAAGGATAAGGACAAGAAGTGATGGGCGCCTTGCGTTTCCTGATACTGCTGTTGCTGGTCATGGTGACGCCTGCTGCGCTG
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| Amino Acid Sequence |
>flagellar motor switch protein FliN
MADENDMTSAEDQALADEWAAALGEAGDSQADIDALLAADAGNSGSRMAMEEFGSVPKSTGPVSLDGPNLDVILDIPVSISMEVGSTDINIRNLLQLNQG SVIELDRLAGEPLDVLVNGTLIAHGEVVVVNEKFGIRLTDVISPSERIKKLR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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