Pseudomonas syringae B576, NG81_RS19995 (gyrB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae strain B576 contig_29, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGTCTTTGAACAGACTTTGAGCGAACTTGTTGAGCTTGAAGGTTTGACCCTGAGCTACTACCGAGGATGGGACAAGGAAAAAGAGCTAAGTACAGTGCTC GCCTCTTCCCTCCACCGCGATCAGCAAATGGGCCACACCCAGGCCGGACCACAACGAGCTGACCTGCGCCTTAGATTAGGCGCGCACAATGCGGCAGATA TTCTGTCTCGCGGTCAGCAAAAGCTGGTGGTCTGCGCACTGCGTATTGCTCAGGGACATCTGGTCAGCCAGGTCCGTCGAGGCCAGTGTATTTACCTGGT AGATGATTTGCCCTCCGAACTGGATGACAACCATCGACGCGCGCTTTGCCGCTTGCTGGAAGAATTACGCTGCCAGGTGTTTATCACCTGTGTAGATCAA GAATTTTTGAGGGAAGGCTGGCAGACGGAAACGCCAGTCGCTTTGTTCCACGTGGAACAAGGCCGTATCACCCAGACCCACGACCATCGGGAGTGATTGC
|
|
| DNA Sequence for Gene |
>NG81_RS19995
|gyrB
ATGAGCGAAAACCAAACGTACGACTCGTCCAGCATTAAGGTGCTGAAAGGACTTGATGCCGTACGCAAGCGTCCCGGAATGTACATCGGTGATACAGACG ATGGCAGCGGTCTGCACCACATGGTGTTCGAGGTGGTTGATAACTCGATCGACGAAGCATTGGCAGGCCATTGCGACGACATCAGCATCATCATCCATCC AGACGAATCTATCACCGTGCGCGACAACGGCCGCGGTATTCCGGTAGACGTGCATAAAGAAGAAGGCGTGTCGGCAGCCGAGGTCATCATGACCGTGCTC CACGCTGGCGGTAAGTTCGATGATAACTCCTACAAAGTATCCGGTGGTTTGCACGGTGTAGGTGTCTCTGTGGTTAACGCCCTTTCAGAGCTTCTGTTGC TGACGGTTCGTCGTAGCGGCAAGATTTGGGAACAGACCTATGTTCATGGTGTTCCACAGGAACCGATGAAGATCGTCGGTGAAAGTGACAGCACAGGCAC TCAGATCCACTTCAAGCCTTCCGCTGAAACGTTCAAGAACATCCACTTCAGCTGGGACATTCTGGCCAAGCGGATTCGTGAGCTGTCCTTCCTGAACTCC GGTGTCGGCATTGTCCTCAAGGATGAGCGCAGCGGTAAGGAAGAATTGTTCAAATACGAAGGCGGTCTGCGCGCGTTCGTTGAGTACCTGAACACCAACA AAACACCGGTTAACGAAGTGTTCCACTTCAACATCCAGCGTGATGACGGTATCGGTGTCGAGATTGCTTTGCAGTGGAACGACAGCTTCAACGAGAACCT GCTGTGCTTCACTAACAACATTCCGCAGCGTGATGGCGGTACTCACTTGGTGGGTTTCCGTTCTGCGCTGACGCGTAACCTGAACAACTACATCGAGCAG GAAGGTCTGGCCAAGAAGCACAAGGTCGCGACCACTGGCGATGATGCGCGTGAAGGTCTGACTGCGATCATTTCGGTCAAGGTGCCTGATCCGAAGTTCA GCTCGCAGACCAAGGACAAGCTGGTTTCGTCCGAAGTCAAAACGGCTGTCGAACAGGAAATGGGCAAGTACTTCTCCGACTTCCTGTTGGAAAATCCGAA CGAAGCCAAAGCGGTTGTCGGCAAGATGATCGACGCAGCCCGTGCCCGTGAAGCTGCGCGCAAGGCGCGTGAGATGACCCGTCGTAAAGGCGCACTGGAT ATCGCTGGCTTGCCGGGCAAACTGGCGGACTGCCAAGAGAAAGACCCTGCCCTCTCCGAACTGTACCTGGTGGAAGGGGACTCTGCTGGCGGATCAGCCA AGCAGGGGCGTAATCGTAGAACCCAGGCCATCCTGCCGCTCAAGGGCAAGATCCTGAACGTTGAAAAAGCGCGTTTCGACAAGATGATCTCTTCGCAGGA AGTGGGCACCTTGATCACTGCGCTGGGCTGCGGTATTGGCCGTGAAGAGTACAACATCGACAAGTTGCGTTATCACAACATCATCATCATGACCGATGCT GACGTCGACGGCTCGCACATCCGTACCCTGCTGCTGACCTTCTTCTTCCGTCAGTTGCCCGAGCTGATCGAGCGTGGCTACATCTACATCGCTCAGCCGC CGCTGTACAAGGTCAAGAAAGGCAAGCAGGAGCAGTACATCAAGGACGACGAGGCCATGGAAGAATACATGACTCAATCGGCCCTTGAAGACGCCAGCCT GCACCTTAGCGAATCGGCACCGGGTATCTCCGGTACTGCGCTGGAGAAGCTGGTCAACGACTTCCGCATGGTCATGAAGACCCTCAAGCGCCTGTCGCGT CTGTACCCACAGGAACTGACCGAGCACTTCGTCTACCTGCCGCCGATCACCCTCGAGCAGTTGTCGGATCACGAGGGCATGCAAGCCTGGCTGGCACTGT TCGACGCGCGTCTGCGCACCGGCGAGAAGTCAGGTCTGGTCTACAAGGCCAGCCTGCGTGAAGACCGTGAACGTAACGTCTGGCTGCCAGAGGTCGAACT GATCTCCCACGGCCTGTCGAACTACGTCACCTTCAACCGCGACTTCTTCGGCAGCAACGACTACAAGACCGTTACCGCTCTGGGTGCGCAGATCAGCACG CTGCTGGAAGAAGGTGCCTACGTACAACGTGGCGAGCGCAAGAAGCCCGTCAACGAGTTCAAGGAAGCCCTCGCCTGGCTGATGGCCGAAAGCACCAAGC GCCACACCATCCAGCGCTACAAAGGTCTGGGTGAGATGAACCCGGACCAGCTGTGGGAAACCACCATGGACCCGAGTGTGCGCCGCATGCTGAAAGTCAC CATCGAAGATGCCATCGGCGCTGACCAGATCTTCAACACCCTCATGGGTGATGCGGTCGAGCCACGTCGTGACTTCATTGAAAGTAATGCGTTGGCCGTG TCCAACCTCGACTTCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TGAAAGCGTGATCGAACACCAACCCCGGCGAAAGCCGGGGTTTTTGTTTGTGGAGTTTGGCCTGCTCGTCAGTCGACGGCGCTGCCCCCTTCCCTGTTTC TACAAAATGCAACCTGCGTCATCTGAGGCTATTCAGGGCCTTTTAATCACTGTCGTCCAGCAGGTTGTTCAACGCAATGGCGCGCAAGTCTCGAACTTTG GCGATGCTTTTTTCTGGCGACGACCGGATCACATCTCTTGGGTCATTGATTCGCACCCGACCATACCCATCGATCAGGAACTGTAAGTCTTCAATGTGCA GGCTATGGGTTCTGAGTCTGGATATGATCTCATCACAGTCCTTCATAACGTTTTTATTGAAAGCCATGTCAGTTGGAATGTGTTTACGGTTATGGATAAC GTCTTCGGAGTCCAGCGCATGATGGATGTAGTCTTTCGCTATCCCGACCTTGTTATCGTATTTGACTAAGGCGTGTGCATCAACGACCGGAAACCCGAGG
|
|
| Amino Acid Sequence |
>DNA gyrase subunit B
MSENQTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDISIIIHPDESITVRDNGRGIPVDVHKEEGVSAAEVIMTVL HAGGKFDDNSYKVSGGLHGVGVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGESDSTGTQIHFKPSAETFKNIHFSWDILAKRIRELSFLNS GVGIVLKDERSGKEELFKYEGGLRAFVEYLNTNKTPVNEVFHFNIQRDDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNNYIEQ EGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALD IAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGIGREEYNIDKLRYHNIIIMTDA DVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPPLYKVKKGKQEQYIKDDEAMEEYMTQSALEDASLHLSESAPGISGTALEKLVNDFRMVMKTLKRLSR LYPQELTEHFVYLPPITLEQLSDHEGMQAWLALFDARLRTGEKSGLVYKASLREDRERNVWLPEVELISHGLSNYVTFNRDFFGSNDYKTVTALGAQIST LLEEGAYVQRGERKKPVNEFKEALAWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSVRRMLKVTIEDAIGADQIFNTLMGDAVEPRRDFIESNALAV SNLDF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|