Pseudomonas syringae B576, NG81_RS15725
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae strain B576 contig_16, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CACCAACCTCAACCTTGAGGACATGGTGCGCAGCGGACGTTTCCGTGAGGATCTGCTGTACCGCCTGAACGTGATTACCCTGAATCTGCCAGCCCTGCGT GAGCGCAGCGAAGACATTCTGACCCTGGCGGACCGCTTTCTGGCGCGTTTCGTCAAGGAGTACGCCCGTCCGGCTCGCGGTTTCAGCGAAGAGGCCCGTG CGGCGCTGCTCAATTACCGCTGGCCGGGCAACATTCGTGAGCTGCGCAACGTGATCGAGCGAGCCAGCATTATCTGTCCACAGGAGCGCGTGGAGGTCAG TCATTTGGGCATGGCTGAGCAACCGACCAACAACGCACCGCGGGTGGGAGCGGCCTTGAGTCTGGACGAGCTTGAAAAGGCGCACATCGGGGCCGTACTG GCAACCAGTGAGACCCTTGATCAGGCCGCCAAGACCCTGGGTATCGATGCTTCGACGCTTTACCGCAAACGAAAACAGTACAACCTATGAAATACCTCAA
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| DNA Sequence for Gene |
>NG81_RS15725
ATGAAGCTGGCCATGAAGTTGCGCACCCGCCTCTTTCTGAGCATTTCGGCGCTGATCACGGTCGCTTTGCTCGGGCTGCTGTTGGGGCTCGTCAGTGTCA TGCAGATGGCCCGGACTCAGGAATCGCTGATTCAGCATAACTTCGCCATCCTCGATCTGGGTCTGAAGTTGCGTCAGAACATGGGTGATCAGTTGGTGTT GATGACCGGTTCCAATCGCAATGAGCCTGAGCTGCAAAGAATGCAGAAGCAGTTCGAAGAGCTGCTGGAGGAGGGATCGGCGCAGGACACCCAGCAAGAT GTGCGCAACGGTTTTGAAAAGACCCGAGGCGATTATCAGCGATTCATTGCCGCCTGGCAGCAGTATGGCAATGATCCGCGAGGCATACGCGGCAACTCGC AATTGAGCGAAAGTTTCGACACGCTGCGTAACGGTCTGATGGATGTGCATCGCAAGGCGCTGGAGAACATCAGCAACGCCGAGATCAACTCCAGGGATCG TGCATTGTGGATCGCCGGCTTGCTGGGCCTGGTCGGGCTGGCGGTGCTGTGCATCGGCTTTGTGACCGCGCATGGCATCGCCCGCCGTTTCGGTGCGCCG ATCGAGGCGCTGGCCAAGGCCGCTGATCGTATCGGCGAGGGTGATTACGAGGTCACGCTGCCCATTTCCTCGGCCGCCGAAATGAACCTGCTGACCCGGC GCTTCGGCATCATGGCCGAAGCCCTGCGCCAGCATCAGGCGACCAACGTCGATGAGCTTCTGGCGGGCCAGCAACGTCTGCAGGCGGTTCTCGACAGTAT CGACGATGGCCTGCTGATGATTGATCGCCAGGGCCACCTGGAGCACCTCAACCCTGTTGCGCAGCGCCAGCTCGGATGGGACGAGAGTCGCCTCGGGCAC AGTCTGGGCGAGGCGTTGGGCCGCCCCGAGCTGGATGAGCAATTGCATCTGGTGCTGCGAGGCGGAACGCTGGAGCGTGCGCCGGAAGACCTGGCCATCG AAATCGACGGCGAGTCGCGACTGCTGACCTACAGCATGACGCCGGTCAGCCACACCAAAGGCCACATCCTGGGTGCGGTGATGGTGCTGCACGACGTGAC CGAGCAACGTGCTTTCGAGCGGGTACGCAGCGAGTTCGTCCTGCGCGCCTCGCATGAGTTGCGCACGCCGGTTACGGGTATGCACATGGCGTTCGGCCTT CTTCAGGAGCGTCTGCATTTTGCTCCCGAGTCCCGTGAGGCCGATCTGCTCAATACGGTCACCGAAGAAATGCAGCGCCTGATGCAGCTCATCAACGACC TGCTGAATTTCTCGCGTTACCAGAACGGTCTGCAGAAGCTCAAACTTGCACCGTGCTCCATCGAGACCTTGCTGCAAGAAGCCAAGGCGCGCTTTGAGGA TCAGGCCCAGGAGCAGGATATTGTGCTGATGCTGGATATGCAGGAGCCGATGCCGCGCCTGCATGCCGATCAGTCCCAGCTGGAGCGGGTACTGGATAAT CTGCTGGACAATGCCTTGCGTCACACGCCGCCGAACGGCCTGATTCGCCTGCAGGCCAGGCGTCACGGTGAGCGGGCGATCATCAGCGTCGAAGATAACG GCGAGGGCATTGCCTACGGACAGCAGGGGCGGATCTTCGAACCCTTCGTCCAGGTCGGCCGCAAGAAAGGCGGCGCCGGGCTCGGGCTGGCGCTTTGCAA GGAGATTGTCCAGCTGCACGGCGGACGCATGGGCGTTTATTCACGGCCGGGGCAGGGCACGCAGTTCTATATGGCTTTACCGCTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGGCTTGAGCACCAAGCCCTCACGCGCTTCAATTCGAGTGATTGAGCACCTGCAGGATGGCCGCGCTCTGTGCGTCAGGCTCGCCGTCGAAGCGTGCCGG GCGATAGTGCATCTGGAAGGCGGCCAGTACCTGGCGTGTTGCGACGTCCAGTTCACCGGTCTGCGGGGTACTGTAGCCCAAGCGTGCCAATTGCTGCTGG AACCAGGTGATGCTCGGCAGATTGACTGCCAGCAATGCCTGACGCTGGGCAACCTGGCGTTCGTCCGGCCAGTTGCCCAGACCTTCGGCAGCGAGGCGTT TCCATGGGAACAATGGCCCCGGATCCTGCTTGCGCAACGGGGCGATGTCGCTATGACCGATGATGTGTTTGGGGTCGATCCTGTTGCGTTTGACGATGTC CTTGAGCAAGACAATGATCGACTGGGTCTGCGCTTCGGTGTACGGATACCACAGGCGACCTGTCGGCGTTTCCTTGAAGCCCGGATTGACGATCTCGATG
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| Amino Acid Sequence |
>hypothetical protein
MKLAMKLRTRLFLSISALITVALLGLLLGLVSVMQMARTQESLIQHNFAILDLGLKLRQNMGDQLVLMTGSNRNEPELQRMQKQFEELLEEGSAQDTQQD VRNGFEKTRGDYQRFIAAWQQYGNDPRGIRGNSQLSESFDTLRNGLMDVHRKALENISNAEINSRDRALWIAGLLGLVGLAVLCIGFVTAHGIARRFGAP IEALAKAADRIGEGDYEVTLPISSAAEMNLLTRRFGIMAEALRQHQATNVDELLAGQQRLQAVLDSIDDGLLMIDRQGHLEHLNPVAQRQLGWDESRLGH SLGEALGRPELDEQLHLVLRGGTLERAPEDLAIEIDGESRLLTYSMTPVSHTKGHILGAVMVLHDVTEQRAFERVRSEFVLRASHELRTPVTGMHMAFGL LQERLHFAPESREADLLNTVTEEMQRLMQLINDLLNFSRYQNGLQKLKLAPCSIETLLQEAKARFEDQAQEQDIVLMLDMQEPMPRLHADQSQLERVLDN LLDNALRHTPPNGLIRLQARRHGERAIISVEDNGEGIAYGQQGRIFEPFVQVGRKKGGAGLGLALCKEIVQLHGGRMGVYSRPGQGTQFYMALPL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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