Pseudomonas syringae B576, NG81_RS15360
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae strain B576 contig_16, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGCCCGGGTTCGCGGCCCGACAATCAGCTCCGCGAGATTATCCAGATCACAAGCCGGTTCTGTTCAGAACGAGACTACATTCACACGATTGCCAAGGCCG AACCTATTAGAACGAAACGTCGCAGAAGCACAGTCATCTGTTAGCCCTGTAAGGGGCTATCCTAAATACCAGAATTTAAGAAAGCCCGACTTCAAACGTT ACTTGTCTGAAGTCGACAGGATGCCACCGATACCTGAAGAGCGCTCGCGTTCAATCCGTGCGGGGCATGAATCGGTGGTTTGATAAATACACTACTTTCA CGTTCGGCAGAGATGATCAAGACAGTGTCTTTGCCGGAGTTTGAACTGACCACCTTCAAAAGAAAGGTGCTGCGCGCCTCTCCCGCGCAACCGCTTTCTG CCCCGTTTCAATGAACCCTCCCTCTCGCATACAGTCGCATACTCGCGCTATTCTCTCGCCCTGATCACGCCCGCACTCGGCAGTTGCACAAGGAGTCTGC
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| DNA Sequence for Gene |
>NG81_RS15360
ATGCCCGTTCGTATTTCAAGACTGGTTACGTTCGGTCTGGCCGCTGCCTTGGCGGCGCTGGCGGGCTGTGGCGAGGAAAAACCGGCGGCGCCCGAACTGC CCAGGGTTTATGTGCAGACGGTAAAAAGTGCCGACTTCGCCGCCAGTGTCGCCCTGACCGGTGATGTTCAGGCGCGAGTGCAGACCCGTCTTTCGTTCCG GGTCAATGGCAAGATCATTCAGCGTAATGTCGATGTGGGCGATCGGGTCACTGCCCGGCAGGTGCTGGCGCGGCTCGATCCCAAGGATCTGCAGATCAAT GTCGACTCGGCCGCTGCTGCTGTGGCCGCCGAGCAGGCCCGCGTGAATCAGGCCAGCGCTGCTTTCGTTCGACAACAAAAACTGTTGCCCAAGGGCTACA CCAGTCGTAGCGAATATGACTCTGCACAGGCCGCCTTGCGCGGTAGTGAAAGTTCGTTGAAGGCGGCGCAGGCGCAATTGGCCAATGCCCGTGAACAACT GGGTTATACCGCTCTGGTGGCCGATGCACCGGGTGTGATCACCGCGCGTCAGGCTGAAGTCGGGCAAGTGGTGCAGGCCACCATGCCGATTTTCGATCTG GCGCGCGACGGTGATCGCGATGCGGTGTTCAATGTCTACGAGTCGCTGTTCGTCAAGCCGCCGACCAATCAGGCTGTGCAGGTCACTTTACTCGATAACC CTAATATCAAGGTCAGCGGCAAAGTGCGCGAAGTGACCCCGGCGGTGTCGGCGCAAACCGGCACCTTGCAGATCAAGATCGCTCTGGACCCGCTGCCTGA AGGCATGGACCTGGGTTCGGTGGTCAGTGTGGCGCTGAGCGCACCGGCCAACGCCAGTGTCGAGTTGCCATGGGCGGCGCTGACCAAGGACCTCGGCGAA CAGTTGGGCAAGCCCGCCGTGTGGGTGGTGGACGAGCAGGGCAAGGTCAATTTGCGCAAGGTCACCGTCACCCGTTACCTGACCGCCAAAGTCATCATTG GCGACGGACTCAAGAGTGGAGAGAAAGTCGTGGTGGCAGGCGGACAGTTGTTACACCCGGACATGCAGGTCGAAATTGCCGAACAGCCCAAGCAACCGAA CGCACAGGTGCAGCCATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AGCGTATGTCGTGCCTGCCGCTGGGCGGCCTGCTGTTGAGCGGTTTTCTATTGAGCGGCTGTGGCAAGGATGAAACACCTCCCGAGCCGGTGCGCCCCGT CGTCTTCGTCGAAGCAAAGCCTGAGTCGAATCAGGATTTCGGGCGTTTCGCTGGCAACATCCAGGCGCGTTATCAAAGTGTGCTGGGCTTTCGTGTCGCG GGGCGCATTGCCCGACGCGACGTTGACGTAGGCGCTGAGGTCAAGAAAGGCGATTTGCTCGCAACCCTCGATCCGACCGATCAGCAGAACGCCGTGCGTG CCCGGCAGGGCGACCTGGCCAATGTTCAGGCGCAGTACATCAACGCCCAGGCCAATGCCCGCCGTCAGCAGGAGCTGTTCGATCGCGGCGTCGGTGCCCA GGCGCAACTGGACATCGCCCTGACCGATCTGAAGACCGCCAGTTCGTCGCAGGAACAGGCCAGAGCCGCGGCTCAACAGGCCCGCGACCAATTGAGTTAC
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| Amino Acid Sequence |
>RND transporter
MPVRISRLVTFGLAAALAALAGCGEEKPAAPELPRVYVQTVKSADFAASVALTGDVQARVQTRLSFRVNGKIIQRNVDVGDRVTARQVLARLDPKDLQIN VDSAAAAVAAEQARVNQASAAFVRQQKLLPKGYTSRSEYDSAQAALRGSESSLKAAQAQLANAREQLGYTALVADAPGVITARQAEVGQVVQATMPIFDL ARDGDRDAVFNVYESLFVKPPTNQAVQVTLLDNPNIKVSGKVREVTPAVSAQTGTLQIKIALDPLPEGMDLGSVVSVALSAPANASVELPWAALTKDLGE QLGKPAVWVVDEQGKVNLRKVTVTRYLTAKVIIGDGLKSGEKVVVAGGQLLHPDMQVEIAEQPKQPNAQVQP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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