Pseudomonas syringae B576, NG81_RS14970
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae strain B576 contig_16, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GTACGCCCTCCCAGCTGGGCATCAAGGCACTGGCGATGGTGAACAGCGATGCACAGAACAGCGCCATGACCATCACCGGCTTGCGCCCTAGCCGATCAGA TATCGGCCCGGTGATCAGCAGGCCGATGGCGAGCATTGCCGTGGCCACGGACAGGATCAGGCTGCTTTGCGCCGCCGTCAGGGAGAACTCGCTGGACAGC GTCGGCATCATCGGCTGAACACAGTACAGCAGGGTAAAGGTCGAAAACCCGCCAGCGAACAGCGCCAATGCCGTGCGTTTGAAAAGCGGCGTGTTCTTTT CGATGTAGGTATCGCCCGGCAGTGTCGACGACTGTACGGGCGAGGTGTTCAAGTCGGGAGTGGACGGGGCGACGGCAGGATTCACAAGGACCTCAGGGCA AGGTTGAGCAGGCAATGAAAAAATCATATAACTCGCTAATCATTCCATCCAATATATTGTTCGACCTGTTTGATAGGTAAAACGACTTAATGGAGGCCGC
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| DNA Sequence for Gene |
>NG81_RS14970
ATGGAATTGCGTCATCTGCGTTACTTCATCGCGGTGGCCGAAGAGCTGCATTTTGGCCGCGCCGCGCAGGCGCTGGGGATTTCTCAGCCGCCGCTCAGCC AGCAGATTCAGACGCTGGAGCAGGAACTGGGCACGCGTCTTTTCGAGCGCACCAACCGGCGCGTCGAGTTGAGCGAATCCGGGCGGCTGTTTCTCGACGA GGCACGGCTGGTGCTGGCGCAGGTCGACAAGGCCACCGACGTAGCTCGGCGTGCGCAACTGGGCGAAATCGGCGAGCTGAAGATCGGCTTCACTTCGTCT GCGCCGTTTACGTCGAGTATCCCGCAGGCGATTTTCGCCTTCCGCCAAGCCTACCCGGACGTGCACCTGACCCTGACCGAGATCACCAGTCAGGAAGTGG CGGCAGGTCTTGAGGACAAAACCATTCAGGTCGGCATCATGCGCCCGCTGGCATTGCCCGACTCGCTGGTGGTGTTCGAATTGCTGAGTGAGCCGCTGGT GGCGATCATGCGTGCCGACCATCCGCTGGCGGCAGAAAGCGAGGAGGGGATCTACATGGCGGCGCTGGCCGCCGAGCCGTTCGTGTTCTTCCCGCGCACT TATGGCAGCGGCATCTACGCGCAAGTCCTGAGCCTGGCACGCGCCGCAGGGTTCAGCCCGCTGATCACCCAGGAAGCGGGCGAAGTGATGACCATCATCG GCCTGGTCGCAGCAGGATTGGGCGTCACCGTACTGCCTGCGTCCTACCGGCGAATGCGTATCGACGGCGTGGTCTACCGCAACGTCCTCGACCCCGGCGC AACCAGCGCGGTGTGGCTGGTGCAACGCAAGGACGAACAATCGCCCATGGCCAAGGCGTTCACCGAGCTGTTGACGCGTAACGTCGGATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ATGCCTGGCGTATATCCGGTACTCACTATCACTTTTGACAGTAGGCAGATCAGTGTTTTTTGCGTTGAATCTCATGTGCACCTGATGCTCCAGGACGGAA TGACAGGAACAGGGAGAGAAGCATGCGCAAACAAATATGGCTGATGGCTTTATTGAGCCTGTCGCTGACAGTGGCGGCAGACGAGAAAATTATCGGTGGT ACGCCCGCACCCGCAGGTGCTTATCCTTTTTTCACTTCATTGACCAAGGAGGATGGCCAGCACCTCTGCGGGGGGGCGTTGATCGCTGCGCAATGGGTGC TTACTGCGGCACACTGCATACGTGGTCAGTCGCCTGCGTTTGTCCAGATTGCTATAGAGAAGTACGGGCCTCCCGTCGTCAGCCGGGACAAGATCAGGAT CGCTGAAGCGTTTATTCCTGCGGATTTCAAAGGCTGGCAGATTTACTCTAAATCAGGCGACGAAAAGGAATCTGGGCTTTACGACATTGCGCTATTGAAG
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| Amino Acid Sequence |
>LysR family transcriptional regulator
MELRHLRYFIAVAEELHFGRAAQALGISQPPLSQQIQTLEQELGTRLFERTNRRVELSESGRLFLDEARLVLAQVDKATDVARRAQLGEIGELKIGFTSS APFTSSIPQAIFAFRQAYPDVHLTLTEITSQEVAAGLEDKTIQVGIMRPLALPDSLVVFELLSEPLVAIMRADHPLAAESEEGIYMAALAAEPFVFFPRT YGSGIYAQVLSLARAAGFSPLITQEAGEVMTIIGLVAAGLGVTVLPASYRRMRIDGVVYRNVLDPGATSAVWLVQRKDEQSPMAKAFTELLTRNVG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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