Strain | Pseudomonas syringae strain B576 contig_12, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
AGCACTCATAGCGAGATCGTTGGTGCGCTGTATCGCGATCATCGCGGCTGGCTGCTGGCCTGGCTCAGACGTAATGTCGCCTGCCCGCAACGTGCTCAGG ATTTGAGTCAGGACACCTTCGTGCGTTTGCTGGGGCGCCATGAATTGCTTGCGCCCAGAGAACCGCGTGCTTTCCTGGCAACCGTCGCCAAAGGGTTGAT GTTCGATCACTTCAGGCGCGCTGCGCTGGAGCAGGCCTATCTCGGGGAATTGATGCTGGTGCCTGAGGCCGAGCAGCCCTCTCCGGAAAAGCAGATGCTT ATTCTGGAAGACCTCAAGGCCATCGACCGCATGCTCGGCACGCTGTCCAGCAAGGCGCGGGCGGCCTTTCTGTACAGTCGCCTCGACGGCATGAGTCACG CCGAGATTGCCGAGAAGCTGGGCGTTTCGGTCTCGCGCGTCAGGCAGTACCTGGCTCAGGCCATGCGGCAGTGCTACGTGGCGCTTTACGGTGAGCCAAC
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DNA Sequence for Gene |
>NG81_RS13575
GTGAACACCAGACCGGTCTCTGCCCGTGTGCTCGATGCGGCCATCGAGTGGCAACTGAACATGGACAGCAACGGCGGCAATGACGCCGAGCTGGCGCGCT GGCTGGCCGCCGACGAAGAGCATGCCCGGGCCTGGAGCCAGTTGGGCATGGTCAATCAGCGCTTTGCTTTGCCCGCAGGTCCGGCACGCAAGGCGTTGCA ACAGTCACCGGGTGCCCTGCGACACAGTTTGCGCAAGCTCGGTGGCGGTCTGGCCGGAGTGTTCATGGCCTTGGGCCTGGCATTGTTCGTCGGCGACCGC TATCTACCGATAGATTACTGGCTTGCCGACCAGCGCACGGCCACCGGTGAACAGCGCGACGTGCGTCTGGCGGACAACACCCTGATTCGTCTGAACACCC ACAGCGCAATCGATGTGCGCTTCGATGCGCAGCAACGTCGGGTCATTCTGCAGGACGGTGAAATACTGGTGCAGACCGGCGATCATGACGACCCGCGGCC CTTCATCGTCGAGACGGCGGATGGAAAGATGCGCGCCCTGGGAACGCGTTTTCTGGTCCGGCGCGAGTCCGATGGAACCCTGCTCAGCGTTTTGCAATCG GCGGTTGTCGCCCACCCGCGCAATGCTCCCGGTGAACAGGTTCTGCGCGAAGGCCAACAGGTGCTTCTGAGCCGCAACGGCCTTGGCCCGTTGCTTGGCA TGCCTTCCGGCGCCGATGCCTGGACGCGCGGCATGCTGGTAGTGGACAACGCGCGGCTGGCGGACATGCTCGCTGAACTGGGGCGCTACCGGACAGGACA TCTGGGCGTCGATCCGAAGGTGGCTGATATGCGGGTGACCGGCACCTTCCCGTTGAATGACACAGACCTGGCGCTCAAGGCGCTGCTGCCGACCTTGCCT GTGCAGATAGAACAACACACAGCGTGGTGGGTGTCCGTGCTGCCCAGGGATCAACAGCCCGGTAATCCTCCGGCAAAACTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
AACATACCTGTTCATGCAGACAGCGTATCGCCCTGACACTTTTTCGGTTTCGAGCGGCTTAGTCTTACAAGTCATTTCGGGGACGCGCTCAGCGCTGCGT CCCTTCGTCTGTGGATAAACCATGAAAAGCCAAACCGTGCGCCGCTGGTCCATCGTGCATACCTGGAGCAGCCTGATTTGCACCCTGTTCCTGTTGATGC TGGCTGTCACCGGCCTGCCGCTGATCTTTCATCATGAAATCGATCATCTGCTCGGCGACGCTCCGCATTACAAAGAGATGCCTGCCGATACGCCACGCCT GGACCTGGAGCAACTGGCCAGGGCTGCCGAAGCGCATCGCCCCGGCGAGGTGATGCAGTATTTTGGCTGGGACGACGAAGACCCCAATGGCGTAATGGCA ATCACCGCTGCAACCGCCGGCACCGAGCCCAACTCGTCGCACACCTTCGCCCTCGATGCGCGCACCGGTGAGGCACTGGAGATGCCTTCTGCCAACGGCG
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Amino Acid Sequence |
>amino acid ABC transporter substrate-binding protein
MNTRPVSARVLDAAIEWQLNMDSNGGNDAELARWLAADEEHARAWSQLGMVNQRFALPAGPARKALQQSPGALRHSLRKLGGGLAGVFMALGLALFVGDR YLPIDYWLADQRTATGEQRDVRLADNTLIRLNTHSAIDVRFDAQQRRVILQDGEILVQTGDHDDPRPFIVETADGKMRALGTRFLVRRESDGTLLSVLQS AVVAHPRNAPGEQVLREGQQVLLSRNGLGPLLGMPSGADAWTRGMLVVDNARLADMLAELGRYRTGHLGVDPKVADMRVTGTFPLNDTDLALKALLPTLP VQIEQHTAWWVSVLPRDQQPGNPPAKL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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