Pseudomonas syringae B576, NG81_RS06975
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae strain B576 contig_11, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCAGCCCAATACGAAAGCTGGAGCCTGCCGCTGGCGGTGATCCTGATCGTACCGATGACCCTGCTCTCGGCGATTGCCGGGGTGATGATCGCCGGCAGCG ACAACAACATCTTCACTCAGATCGGCCTGATCGTACTGGTAGGCCTGGCGTGCAAGAACGCGATTCTGATCGTCGAGTTCGCCAAGGACAAACAGGCTGA AGGGATGAGCCCGCTGGATGCGGTACTGGAGGCATGCCGCCTGCGTCTACGGCCGATCCTGATGACCTCGTTCGCCTTCATCATGGGGGTCGTGCCTCTG GTGCTGTCCAGCGGTGCGGGTGCCGAGATGCGCCATGCGATGGGTGTCGCAGTGTTCTCCGGGATGCTGGGTGTCACGTTCTTCGGCCTGCTGCTGACGC CGGTGTTCTACGTGCTTATCCGTAATTACGTCGAACGCCAAGAGGCCCGCAAGGCCGCCAGGGTAAACAGCCAGCAAAACCTGCCTGCGGAGATGCATTG
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| DNA Sequence for Gene |
>NG81_RS06975
ATGAGCGCGTACAAAGTCTTCATCCCGAGCCTGCTGGTCATGGCACTGGCGGCCTGCGCCGTGGGCCCCGACTACCGGGCACCGGTTACGGCGCCAGCGA AACTGGCGTCCGCCGCCCAGGGCAGCTATGACCGCAGCAAAGTGGACAGAGCCTGGTGGCAGCAGTTCGAGGACCCGACCCTCAATAAACTGGTAGCCAG GTCACTGGACGGCAACCGCGATCTGCGCGTCGCCTTCGCCCGGCTCAAGTCGGCGCGAGCCATTCGCGATGACGTCGCCAACGATGTGATGCCAGTAGTA ACCAGTCGCGCCAGCAGTGACATCGGCAAGGGTCAGCAACCCGGCATCACCGAGCGCCGAGTCAACAGCGAGCGCTACGACCTGGGCCTGGACATGGCCT GGGAAGTGGACTTGTTCGGGCGCATCCAGCGCCAGCTGGAAGCCAGCGACGCCGATCAGGAAGCTGCAGAGGCCAACCTCTATCAGCTGCAGGTCACCCT GATTGCCGAGGTGGTCGACGCCTACGGCCAACTGCGCGGCGCACAGCTACGAGAAGCCATTGCCCGCGACAACCTGAAAAATCAGCAGAGTTCTCAGGAC GTGACCACGCAACTGCGGGATGCGGGTGTGGGCAATGAGCTGGATGTGGTGCGTGCAGAGGCACGACTGGCCGCTGTCGAAGCGACCGTTCCGCAGTTGC AGGCCGAGCAGGCTCGCCAACGCAACCGCATCGCCACGTTATTGGGTGAGCGTCCGGAAAACCTCAGCGTCGACTTGAGCCCTAGCAAACTGCCGGCCAT CGCCAAGGCCTTGCCGATTGGCGACCCTACGCAAGTGTTGCGCAATCGGCCGGACATCCGTGCAGCCGAGCGACAACTCGCTGCATCGACCGCACGTATC GGCGTTGCGACTGCCGATCTGTTCCCAAGGGTCAGCCTGAGTGGTTTTCTGGGCTTTACCGCCGGACGCGGCTCGCAGATCGGTTCGTCAGCGGCCAGAG CCTGGTCGCTGGGCCCGAGCATCACCTGGGCAGCCTTCGATCTGGGCAGTGTCCGGGCGCAGATTCGCAGTGCCGACGCTGACGCCGAGGGCGCACTGGC CAACTATGAGCAGCAAGTACTGCTCGCCTTGGAAGAGTCGGAGAACGCGTTCAGCGATTACGACAAACGCCAGCAGCGGCTGGTCTCGCTGATGCGCCAA AGCGATGCGAGTCGCTCGGCGGCCAGACTGGCCTCGGTGCAGTATCGCGAAGGCACGGCGGACTTCCTGGTCCTGCTGGATGCCGAGCGCGAGCGTCTGG CGGCCGAGGACGCTCAGGCGCAGGCAGAAATCGAGCTGTACCATGGCATTGTGGCTATCTACAAGGCACTGGGTGGTGGCTGGCAACCTCAGGCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACCTGAAAAGCCGGTAAACCCGCCCCGCGTCCGATCAGGTCGCGGGGCTTTTTTTGCCTGAAACCCGGCTGCATCATGATTGCCGTTTGACAGCTGCCAG CCACTCCCCGAAGCTGCAACCCGTCAAGCATTGGAAATCGATATGCCCAGACTTTCTACCACGGGGTTATCGCCTCAACCCACTTCTCGACGTCGCTGGC TGATCGGCGCAGCGGCTGCAGCGCTTTTGGTGCTTTCGCTGGTTTTCTGGTGGTGGCGCATGCCCATCCAGACCGCTCCCGTGAAGCTGAGTCATACCTA TGCGCAGGCGTTGGAGCAGGCACATGACGGCAAACCGGGTGCCGCGCGCGTGCTGTATCAACAACTGGCTCGCACTGACCTGTCTGACACGCAACGCATC AGCCTGCTCGCCGAACTGAGCGATTATCCAAGCCCCCAGGCCCTCAAGTTGCTCGACGCTGCGCTGAGTAACCTGTCCGCTCAAGTGCGCGAAGCGGCGA
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| Amino Acid Sequence |
>RND transporter
MSAYKVFIPSLLVMALAACAVGPDYRAPVTAPAKLASAAQGSYDRSKVDRAWWQQFEDPTLNKLVARSLDGNRDLRVAFARLKSARAIRDDVANDVMPVV TSRASSDIGKGQQPGITERRVNSERYDLGLDMAWEVDLFGRIQRQLEASDADQEAAEANLYQLQVTLIAEVVDAYGQLRGAQLREAIARDNLKNQQSSQD VTTQLRDAGVGNELDVVRAEARLAAVEATVPQLQAEQARQRNRIATLLGERPENLSVDLSPSKLPAIAKALPIGDPTQVLRNRPDIRAAERQLAASTARI GVATADLFPRVSLSGFLGFTAGRGSQIGSSAARAWSLGPSITWAAFDLGSVRAQIRSADADAEGALANYEQQVLLALEESENAFSDYDKRQQRLVSLMRQ SDASRSAARLASVQYREGTADFLVLLDAERERLAAEDAQAQAEIELYHGIVAIYKALGGGWQPQA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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