Pseudomonas syringae B576, NG81_RS06430
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae strain B576 contig_11, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTGGCATAGCGGCTAATTGTCGAGTGGTGTCCGACAACTAGCTGTCATTACTCATCCCGTTTTGCTCATGCGCCACACCACAGGGTTTGATCGAAACCTG TTGCCTCTGTCTTACACCCTGGCCATGCAAAAAAGACCGCCGTCGCGGCTCCAGAGCCCTGGAAGGTCAGCATGCTTGCGCCTGTTTCCTTAGACCATAG TCATTTTATTAGTGTGTCTGCGGCCTTGAGCCCAGCCGGTTTTCGCGTAATAGCCGATTAGCATTTCTGCATATATTTAATTATGACCTTAATACTATGT CGAAAAGATACGCTATCCCCTATCAATATTAAGCACATGACCCTTGAGCGCTGGCTAAAGGTCAGTGTTGTAAAAAATCAGCTTCAAAAAAAAGTTCAAC AAATCGGATACAAGGTCGATACAAATATTTGACGCCGCTATGATGGCGTTCTAGTATTACCCACCTTTTTGATATCAATATGCTACCGCAAGGACGCGCC
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| DNA Sequence for Gene |
>NG81_RS06430
GTGTATCCTCATGCCCTAAAACTGGCTTTGCTGCTACTGCTCGCCATCGCGCCAGCTACCTCGCTTGCAGCCACTGCTCCCGCCAGTTTGCCAGGTGACC AGGATCTTATTCGTGACCGTCAGGATCGCCTGCTCGAAGAGCAGCGCCGCCGCCTTGAAGAACTCAAGGACCTGCCGGGCAAACAAACCGCACCCGCTGC CCCGAGTTCTCCGGCCGATACACGTTGTTTCACCATCAATCGTATTGAGCTCAAGGGCGCCGACTCGCTATCGGCCGCCGAGCGCGATGCGTTGACCAAG CCCTATATTGGCAAGTGCCTTGGTGTCGCGCAGCTCAATGAGCTGCTTAAAGTCATCACCGATCACTACCTCGAAAAAGGCCTGGTGACCACTCGCGCCT ATCTGCCGCAACAGGACCTGTCGACAGGCGACCTGCAAGTGCTGGTCATCGAAGGCAAGCTTGAGCATCTGCGTGGCGATCCTGCCAGCGGCCTGTCGGC GAGTGAGCTGGCCATGACGTTTCCCGGCAGGGAAGGCCAGATGGTCAACCTGCGCGAAATCGAGCAGATGGTCGATCAGCTCAATCGCCTGCCGTCCAAT CAGGCGCAGATGGAGCTGACCCCCGGTAAGGCCGTCGGTGGCAGTGACGTAGTGGTCAAGAACACTCCGCAAAAACCATGGCGGGCCAACCTGTCGCGTA CCAACGAAGGTCAGCGCAGCACCGGCGAGCAGCAATGGAACGCTGGCCTTGAGTGGGATAATCCGTCGGGGCTGGCCGACCAGTTCAGCCTGCGCGGCGG CCACGACGCGATCAGCGATCGGCAGAAAGCCTCCCGCAACGCCTCGCTTGCCTACAGCCTGCCGTGGGGCTGGTGGACGTTCAGCTACCTGTACAACACC AGTGAATATCGTTCGGTGGCGCAGGCCTCGAACGTCAACTTCAAGCAGGACGGCGATAGCCAGAACCACCAGTTCAAGGCCGAGCGGGTCGTGTATCGCG ACGCGCTGAGCAAGACCTCGCTCAACGCCGGTCTGTCCTACCTGCGCACCAACAATTATGTCGAAGGCAGCAAGCTGGCAGTCAGCAGCAATCGCATCAC CGAGGCGCAGTTCGGCATCAACCACGGTCGGCGGGTCGGCTCGGCGTTCGTCAACATCGATCTGGGCATGCAGCAAGGCATCGGTGCACTGGACGCGCAG GGCAACCACGATCCTCGCCCGGGTGAGGCCGATGCGCGGTATCGCAAATACACCGGCACCCTCAGCTATCTGCACCCCTTTCAACTGTGGGGCGAAAACC TCAGCTTCACCAGCCTGGCCACCGGGCAGCGCAGTGAGGATGTGCTGTTCAGTTCGCAACGCACCAGCTTGGGCGGATCGGCATCGGTTCGCGGTTACAA GGATGAGTTTCTGTCTGGCGACAGCGGTGGTTACTGGCGTAACGAGTTGCGCCTGACTCGCCCGGTCACCCTGGACTGGCTGCGCCCGGTGTTCGCCGAG TATGGCGCGGCTGCCGGTTACGACCAGGGTGTTATCCGCAACGATCGTTACAACGGCAATCAGCATGGGCGCTTGTCCAGTAACTCGTTCGAGCTGTTTA CGCGTGGCCAGCACGTTGCTGCCTCAGTGACGTTCGCTCATTCCCTGGAACGTCCCGATGTGATCGAGCGCGAAGCGCCGATCTATTTCCGTATGGACTT CTTTCTTTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TAGCGCCGTTTTCAACCTACCTGTTTCGAGGTCATTTACATGGACGTCCACCAACTGGCTCTGCTTGCTCGTCAGCCTTCTGCTGTGCTGGTCGAGCGCC GGTCTTTCTGGGGAATGCCCAAGCGCGGCCTCGCGCTGATTCTCGCCAATGCGATGTTCTGGCAGCCGATGCTGGTTCAAGCCGAAGGCATCGTGGTCAG CGGCACGAATACCAGTCTGAACCAGGCCGGCAATGGCGTGCCTATCGTCAACATCGCCGCGCCTAATGCCAGCGGCCTGTCACACAACCAGTATCAGCAG TTCAACGTCGACAGCCAGGGCGTCATCCTCAACAACTCCACCAACCAGACCCAGAGCACCCAACTGGGCGGCATCATCGTCGGCAACTCCAACCTGCGCG GCACGGCGGCCAGCACCATCCTCAACGAAGTGGTCGGGGCCAACGCCAGTCAGCTCAGGGGCTATACGGAAGTGGCCGGGCAGGCGGCGCGTGTCATCGT
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| Amino Acid Sequence |
>hemolysin activator protein, HlyB family
MYPHALKLALLLLLAIAPATSLAATAPASLPGDQDLIRDRQDRLLEEQRRRLEELKDLPGKQTAPAAPSSPADTRCFTINRIELKGADSLSAAERDALTK PYIGKCLGVAQLNELLKVITDHYLEKGLVTTRAYLPQQDLSTGDLQVLVIEGKLEHLRGDPASGLSASELAMTFPGREGQMVNLREIEQMVDQLNRLPSN QAQMELTPGKAVGGSDVVVKNTPQKPWRANLSRTNEGQRSTGEQQWNAGLEWDNPSGLADQFSLRGGHDAISDRQKASRNASLAYSLPWGWWTFSYLYNT SEYRSVAQASNVNFKQDGDSQNHQFKAERVVYRDALSKTSLNAGLSYLRTNNYVEGSKLAVSSNRITEAQFGINHGRRVGSAFVNIDLGMQQGIGALDAQ GNHDPRPGEADARYRKYTGTLSYLHPFQLWGENLSFTSLATGQRSEDVLFSSQRTSLGGSASVRGYKDEFLSGDSGGYWRNELRLTRPVTLDWLRPVFAE YGAAAGYDQGVIRNDRYNGNQHGRLSSNSFELFTRGQHVAASVTFAHSLERPDVIEREAPIYFRMDFFL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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