Pseudomonas syringae B576, NG81_RS05265 (rimO)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae strain B576 contig_10, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGCCAGTCTTCGTGGTCCGAGCAAAACATCCAGGAAATCGACGAAGCCATGGCATTCAGCCCATGGCATGGCCTTGAGGCGCATCGTCCGTTGGGCGGCG TCATGCGCGTACGCAAACCTGCCTATGAACACTCGGCGGGCTTTCGCAGTCACCACAACGGTTGTCCGATGCATGAGCCGCGCCGCTGAGAGCATGTGAA AGTCAGTTCAGGCCTGCACAGGTGGGCCTGGACTTCATTCAAAATGTCACCGTCACCCGTTGCAACATCGGCCATCCTCCTCGATACACTGCGTGTAACC GACTTATTGTCGGTGGTGATGCAATCGGCTAAGCACGCGCTGGCCCCGGCTGCCTCTCGCGTACGTCGTAATTCTCATGCAAACGCTGGTCATCCTGCCC ACTCGCCGCTAGAATTGCGCACTTTTTGATCAGAGGCGCAGCAAGCGCCCAGTCAGCGCCTGCGCTTCGCGCCCGGGCGCCCTTCACGCCGAGGTTTGCC
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| DNA Sequence for Gene |
>NG81_RS05265
|rimO
ATGTCCACCGTCACCACGCCGTCCGCCCCCAAGGTTGGATTCGTTTCACTGGGTTGCCCAAAGGCACTCGTTGACTCTGAACGCATCCTGACCCAACTGC GCATGGAAGGTTACGAAGTCGTTGCGACCTACGAGGACGCCGACGTAGTAGTGGTCAACACCTGTGGCTTCATCGATACGGCCAAGGCCGAGTCGCTGGA AGTGATCGGCGAAGCCATCAAGGAAAACGGCAAGGTCATCGTGACCGGCTGCATGGGCGTCGATGCGAGTGTCATTCGCAATGTGCATCCGAGCGTGCTG TCGGTGACCGGCCCGCAGCAGTACGAGCAGGTGGTCAACGCGGTGCACGATGTCGTGCCGCCCCGCAAGGATCACAATCCGTTGATCGACCTGGTGCCGC CACAAGGCGTCAAGCTGACCCCGCGTCACTACGCGTATCTGAAAATTTCCGAAGGCTGCAACCACAGTTGCAGCTTCTGCATCATCCCGTCGATGCGCGG CAAGCTGGTCAGCCGCCCGGTGGGTGATGTGCTGGACGAGGCCAAGCGCCTGGTCAAATCCGGTGTGAAGGAGCTGCTGGTTATTTCCCAGGACACCAGT GCCTATGGCGTTGACGTCAAATACCGCACCGGTTTCTGGGACGGCCAGCCGGTCAAAACCCGCATGACCGAGCTGTGCCAGGCGCTGGGCTCGATGGGTG TCTGGGTGCGCCTGCACTATGTCTACCCGTACCCGCACGTGGACGAACTGATCCCGTTGATGGCCGCTGGCAAGATCCTGCCCTACCTGGACATCCCGTT CCAGCACGCCAGCCCGAAAATCCTCAAGCTTATGAAACGTCCGGCCTTCGAAGACAAGACCCTGGCACGCATCAAGAACTGGCGTGAGCAGTGCCCTGAC CTGATCATCCGTTCGACCTTCATCGTCGGCTTTCCCGGCGAAACCGAAGAAGACTTCCAGTACCTGCTGGACTGGTTGACCGAAGCGCAGCTGGACCGGG TTGGCTGCTTCCAGTACTCGCCGGTTGAGGGCGCGCCTGCCAATCTGCTGGACGCGGCCATCGTGCCGGACGACGTCAAACAAGATCGCTGGGATCGTTT CATGGCTCATCAACAGGCAATCAGCGCTGCTCGCCTGCAGATGAAGATCGGCAAGGAGATCGAAGTGCTGATCGACGAAGTCGACGATCGTGGTGCCGTG GGCCGCTGCTTCTTCGACGCCCCGGAAATCGACGGCAACGTGTTCATCGGCCTGGAAGACGGCAGCACCGTTCAGCCCGGCGACAAGCTCATGTGCCGAG TGACCGATGCCGACGAATACGACCTGTGGGCCGAAATGCTCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCGCTCTCCCTGGTCGCAAGCGAAAGCCCTGCCCTTTAACCGGCAGGGCTTTTTCGTCTCTGGCTGCTGTCTATCCAGGACAAGCTGAAAGGAGGACACG AGATGCCGTTGTATACGCCGGATACCCACGATTACCCGGAATTGACCGAGGTATGGGAACGCTCGGTGCGCGCGACCCATGACTTTCTGCCAGACGCCTA CATCACCCGGCTCAAGGTGCTGCTGCCGCAATATCTAGGCAGTGTGACCCTGTTCTGTACCCGGGATGAGCAGCTCAACATCACCGGCTTTGCAGGCACG CGTAACAGCCGTCTGGATATTCTGTTCATCGAACCTGACCATCGCGGCCAGAAGCTGGGCACACAGCTGCTGAATCATGCAATCGAGCAGTTCAATATCC GTGAACTGGACGTCAACGAGCAGAATACGCAGGCGTTGGGATTTTACCGCAGGCATGGTTTCGAGGTTGTCAGCCGCTCTGAAGTCGATGGTCTGGGCCA
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| Amino Acid Sequence |
>ribosomal protein S12 methylthiotransferase RimO
MSTVTTPSAPKVGFVSLGCPKALVDSERILTQLRMEGYEVVATYEDADVVVVNTCGFIDTAKAESLEVIGEAIKENGKVIVTGCMGVDASVIRNVHPSVL SVTGPQQYEQVVNAVHDVVPPRKDHNPLIDLVPPQGVKLTPRHYAYLKISEGCNHSCSFCIIPSMRGKLVSRPVGDVLDEAKRLVKSGVKELLVISQDTS AYGVDVKYRTGFWDGQPVKTRMTELCQALGSMGVWVRLHYVYPYPHVDELIPLMAAGKILPYLDIPFQHASPKILKLMKRPAFEDKTLARIKNWREQCPD LIIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSPVEGAPANLLDAAIVPDDVKQDRWDRFMAHQQAISAARLQMKIGKEIEVLIDEVDDRGAV GRCFFDAPEIDGNVFIGLEDGSTVQPGDKLMCRVTDADEYDLWAEML
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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