Pseudomonas aeruginosa PAO1-VE2, N296_3269 (wbpB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa PAO1-VE2 genome. [Details] | |
| DNA Sequence Upstream of Gene |
CGAACTGTCTGGTGAGGTCAACCAGGCCATGCCGGAATACGTACTGGGCAAACTCATGGATGGCCTGAACGAGGCAGGCAGGGCCCTCAAGGGCAGTCGT GTACTGGTATTGGGTATCGCTTATAAGAAGAATGTCGACGACATGCGCGAGTCGCCATCCGTGGAAATCATGGAGCTGATCGAAGCCAAGGGTGGGATGG TCGCCTATAGCGATCCGCATGTGCCGGTGTTCCCGAAGATGCGTGAACACCACTTCGAACTGAGCAGTGAGCCGCTGACTGCCGAAAACCTGGCTAGGTT CGACGCTGTAGTGCTTGCGACCGACCATGACAAGTTTGACTATGAGCTGATCAAGGCCGAAGCCAAGCTAGTTGTTGACAGCCGTGGCAAGTACCGCTCC CCGGCGGCACACATCATCAAGGCTTGATCACCCATCCCAGCATGTCCATCCGCTCGTGCCAGAAGGCCGGGCGGATCCGCTCATTTCCATAGGACGAACC
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| DNA Sequence for Gene |
>N296_3269
|wbpB
ATGAAAAATTTCGCTCTCATCGGTGCTGCCGGCTACATCGCTCCTCGCCATATGCGCGCCATCAAAGACACCGGTAACTGCCTGGTTTCGGCCTATGACA TCAATGACTCGGTCGGTATTATTGATAGCATCTCTCCCCAGAGCGAGTTTTTTACCGAGTTCGAGTTCTTTCTTGATCATGCGAGCAACCTCAAGCGCGA CTCTGCTACCGCGCTGGACTACGTATCGATCTGCTCGCCCAATTACCTGCACTACCCGCATATCGCTGCAGGTCTGCGCTTGGGTTGCGACGTAATCTGC GAAAAGCCGCTTGTTCCAACCCCAGAGATGCTCGATCAGTTGGCTGTTATCGAGCGCGAAACCGATAAGCGCCTCTACAACATTCTGCAACTGCGTCATC ACCAGGCGATCATCGCATTGAAGGACAAGGTCGCCCGCGAAAAAAGTCCGCATAAGTACGAGGTCGATCTGACTTACATTACTTCCCGCGGCAACTGGTA TCTGAAAAGCTGGAAGGGAGATCCACGTAAGTCGTTCGGCGTGGCTACCAACATCGGTGTGCACTTCTACGACATGCTGCACTTCATCTTTGGCAAGCTG CAGCGTAATGTTGTGCACTTCACTTCCGAGTACAAGGCAGCTGGTTATCTGGAGTACGAGCAGGCCCGTGTGCGTTGGTTTCTGTCCGTGGATGCTAACG ACCTGCCGGAGTCGGTCAAGGGCAAAAAGCCGACCTATCGTTCGATTACCGTCAACGGTGAGGAAATGGAGTTCTCTGAAGGCTTTACCGATCTACATAC AACCAGCTACGAAGAAATTCTCGCTGGTCGTGGTTATGGCATCGATGACGCTCGTCATTGTGTGGAAACTGTCAATACCATTCGCAGCGCCGTCATCGTA CCGGCCTCTGATAACGAAGGGCATCCGTTCGTCGCGGCGCTTGCGCGTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGTAGAAAAGGAGGTGGCCGTCCTCGGTCACCTGTTTACAGCAGGTTTCCGCAGGATCATTCATCAGCATGTCATCTAGTAGCTCTAAATTGCTGAACGG TATGGTCGCGGTAAGTTCAGGCAGAAACATTCGGCTGGATGTCCAGGGGCTGCGGGCTGTTGCAGTTCTGGCTGTGCTAGCTTACCACGCCAACAGTGCC TGGCTCAGGGCTGGGTTTGTCGGCGTTGACGTGTTCTTCGTCATTTCCGGGTTTATCATTACCGCCTTACTGGTCGAGCGCGGTGTAAAAGTTGATCTGG TAGAGTTTTACGCGGGCCGTATCAAACGTATTTTTCCAGCCTATTTCGTCATGTTGGCGATTGTCTGCATTGTCTCGACAATTCTGTTTCTGCCTGATGA CTATGTTTTTTTTGAAAAAAGTCTACAGTCATCTGTATTTTTTTCCAGTAATCACTATTTCGCTAATTTTGGTAGTTACTTTGCTCCGAGAGCTGAAGAG
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| Amino Acid Sequence |
>lipopolysaccaride biosynthesis protein wbpB
MKNFALIGAAGYIAPRHMRAIKDTGNCLVSAYDINDSVGIIDSISPQSEFFTEFEFFLDHASNLKRDSATALDYVSICSPNYLHYPHIAAGLRLGCDVIC EKPLVPTPEMLDQLAVIERETDKRLYNILQLRHHQAIIALKDKVAREKSPHKYEVDLTYITSRGNWYLKSWKGDPRKSFGVATNIGVHFYDMLHFIFGKL QRNVVHFTSEYKAAGYLEYEQARVRWFLSVDANDLPESVKGKKPTYRSITVNGEEMEFSEGFTDLHTTSYEEILAGRGYGIDDARHCVETVNTIRSAVIV PASDNEGHPFVAALAR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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