Pseudomonas aeruginosa PAO1-VE2, N296_137
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa PAO1-VE2 genome. [Details] | |
| DNA Sequence Upstream of Gene |
CTGATGAACGTCGCCAAGCAGGTCACCAACGGCGCCGTGCCGATGGGCGCGGTGATCGCCAGCAGCGAGATCTACGACACCTTCATGAACCAGGCGCTGC CCGAGCACGCGGTGGAGTTCAGCCACGGCTACACCTACTCCGCGCACCCGGTCGCCTGCGCCGCCGGCCTCGCCGCGCTGGACATCCTGGCCAGGGACAA CCTGGTGCAGCAGTCCGCCGAGCTGGCGCCGCACTTCGAGAAGGGCCTGCACGGCCTGCAAGGCGCGAAGAACGTCATCGACATCCGCAACTGCGGCCTG GCCGGCGCGATCCAGATCGCCCCGCGCGACGGCGATCCGACCGTGCGTCCGTTCGAGGCCGGCATGAAGCTCTGGCAACAGGGTTTCTACGTGCGCTTCG GCGGCGATACCCTGCAATTCGGCCCGACCTTCAACGCCAGGCCGGAAGAGCTGGACCGCCTGTTCGACGCGGTCGGCGAAGCGCTCAACGGCATCGCCTG
|
|
| DNA Sequence for Gene |
>N296_137
ATGAGCGGCCGCCCGCAAGCCGTACCCACCGTGCAGGTGGACAACGCCGAGGTGATCGTGACCGAATGGCGCTTCGCCCCCGGCGCGGAAACCGGGCGCC ACCGCCACGGCCACGACTATGTGGTGGTACCGCTGACCGACGGCACGCTGCTGCTGGAAACCCCCGAGGGCGACCGCCACGCGCCGCTGGTCGCCGGACA GGCCTACTTCCGCAAGGCCGGCGTCGAGCACAACGTGATCAACGCCAGCGCACACGAAGTGGTCTTCGTCGAGACCGAGATCAAGTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TCCGCACCCGCTCCCCAGGGAGCGGGTAAAGGGAAAGGGCCACGGCCCTTTCGTCACCCCTAGCGAAGAGAGAACAAGACAAGATGGGCACCCTCCACCA CCTGATCAACGGCGAAATGGTCGCCGACAACGGCCGCAGCGCCGACGTCTTCAACCCCTCCACCGGCGAAGCCATCCACAAGGTCCCGCTGGCCGACGGC AAGACCCTGCAGAAAGCCATCGATGCCGCCAGGGCCGCTTTCCCGGCCTGGCGCAACACCCCGCCGGCCAAGCGTGCACAGGTGCTGTACCGCTTCAAGC AACTGCTGGAGCAGAACGAGGCGCGGATTTCCAAGCTGATCAGCGAAGAGCACGGCAAGACCCTGGAAGACGCCGCCGGCGAACTCAAGCGCGGCATCGA GAACGTCGAGTACGCCTGCGCCGCCCCGGAAATCCTCAAGGGCGAGTACAGCCGCAACGTCGGCCCGAACATCGACGCCTGGAGCGACTTCCAGCCGATC
|
|
| Amino Acid Sequence |
>cupin domain protein
MSGRPQAVPTVQVDNAEVIVTEWRFAPGAETGRHRHGHDYVVVPLTDGTLLLETPEGDRHAPLVAGQAYFRKAGVEHNVINASAHEVVFVETEIK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|