Pseudomonas aeruginosa PAO1-VE13, N297_5339 (rfbD)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa PAO1-VE13 genome. [Details] | |
| DNA Sequence Upstream of Gene |
TGCTCGAACAACTACGGCCCGTACCACTTCCCGGAAAAGCTCATCCCACTGGTGATCCACAACGCCCTGGCCGGCAAGCCGCTGCCGATCTACGGCGACG GCCAGCAGATCCGCGACTGGCTCTACGTCAAGGACCATTGCAGCGCCATCCGCCGGGTCCTCGAAGCCGGGCAACTGGGCGAGACCTACAATGTCGGCGG CTGGAACGAAAAGGCCAACCTCGACGTGGTCGAGACCCTCTGCGCCATCCTCGACCAGGAGCAGCCGCGCGCCGACGGCCGCAGCTATCGCGAGCAGATC ACCTTCGTCAAGGATCGTCCGGGCCATGATCGCCGCTACGCCATCGATGCCACGCGCCTGGAGCGCGAGCTGGGCTGGAAGCCGGCGGAAACCTTCGAGA CCGGCATCCGCAAGACCGTGCGCTGGTACCTGGACAACCAGGACTGGGTGGCCAACGTAACCAGCGGTGCCTACCGCGAGTGGGTGGGTAAGCAGTACGC
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| DNA Sequence for Gene |
>N297_5339
|rfbD
ATGAACCGGATCCTTCTCCTCGGCGCCAACGGCCAGGTCGGCTGGGAGCTGCAGCGCGCCCTGGCGCCGCTGGGCGAACTGCTGGTCTGTGACCGTCGGC GCGCCGATCTCGCCGACCCCGAAGGCCTGGCGCGACTGGTTCGCGCCGAGCGGCCGCAGTTCATCGTCAACGCCGGTGCCTACACCGCGGTGGACAAGGC CGAGAGCGATGCCGACAACGCCCGCCTGATCAATGCCCGCGCCGTCGCGGTACTGGCCGAGGAGGCCGCGGCCTGCGGCGCCTGGCTGGTGCATTACTCC ACCGACTACGTGTTCGACGGCGCGGGCAGCGTGCCTTTCGCCGAGGACGCGCCGACCGGCCCGCTGAGCGTCTACGGGCAGACCAAGCTGGAAGGCGAGC AGGCCATCCGCGCCAGCGGCTGCCGCCACCTGATCTTCCGCACCAGCTGGGTCTACGCCGCGCGCGGCGGAAACTTCGCCAAGACCATGCTGCGCCTGGC CGGGCAACGCGACGAACTCAAGGTCGTGGCCGACCAGTTCGGCGCGCCCACCAGCGCCGAGCTGATCGCCGACGTCACCGCCCAGGCCCTGCAGCGCCTG TGCTGGGATGTCGAGCTGGCAGCACGGGCCAGCGGCACCTACCACCTGGTCGCCAGCGGCGAGACGTCCTGGCACCTCTATGCGCGCTTCGTCATCGAAC AGGCGCTGGAGCGGGGCTGGGAGTTGCAGGCGACGCCGCAGCGGGTCCTGCCGATCGCCACCGAGGACTACCCGGTGCCGGCGAAGCGTCCGGCCAATTC GCGCCTCGACAACCGCAAGCTGCAACAGGTCTTCGGCCTGGTACTGCCAGACTGGCGCTACCATGCCGGACGCATGATCCAGGAACTGAGCGAGCAGGGA CCACTATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AACGCAAGGGCATCATCCTCGCCGGAGGCTCGGGCACCCGCCTGCACCCGGCAACGCTGGCCATCTCCAAGCAGTTGCTGCCGGTGTACGACAAGCCGAT GATCTACTACCCGCTCAGTACCCTGATGCTGGCGGGCATCCGCGAGATACTGATCATCTCGACCCCACAGGACACCCCACGCTTCCAGCAGTTGCTGGGC GACGGTTCGAACTGGGGCCTGGACCTGCAATATGCCGTGCAACCGTCGCCGGACGGCCTGGCCCAGGCCTTCCTGATCGGCGAGTCGTTCATCGGCAACG ACCTCAGCGCGCTGGTCCTGGGCGACAACCTCTATTACGGCCACGACTTCCACGAGTTGCTCGGCAGCGCTTCGCAGCGCCAGACCGGCGCCAGTGTCTT CGCCTACCACGTGCTGGACCCGGAGCGCTACGGCGTGGTCGAGTTCGACCAGGGCGGCAAGGCCATCAGCCTGGAAGAGAAGCCACTGGAGCCGAAGTCG
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| Amino Acid Sequence |
>dTDP-4-dehydrorhamnose reductase
MNRILLLGANGQVGWELQRALAPLGELLVCDRRRADLADPEGLARLVRAERPQFIVNAGAYTAVDKAESDADNARLINARAVAVLAEEAAACGAWLVHYS TDYVFDGAGSVPFAEDAPTGPLSVYGQTKLEGEQAIRASGCRHLIFRTSWVYAARGGNFAKTMLRLAGQRDELKVVADQFGAPTSAELIADVTAQALQRL CWDVELAARASGTYHLVASGETSWHLYARFVIEQALERGWELQATPQRVLPIATEDYPVPAKRPANSRLDNRKLQQVFGLVLPDWRYHAGRMIQELSEQG PL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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