Strain | Pseudomonas aeruginosa PAO1-VE13 genome. [Details] | |
DNA Sequence Upstream of Gene |
GTGGTACTGGAAAGCCGCATCACCGGCAACGTCATCGAACAGACTCGCTTGCAGAACGCCGCCGAGTCCGGACTCCGCGAAGGCGAGCGGCGCTTCGTCA ACACCCTGCGTCCGCCGGAGCCCGGCACCGGTTGTACGGCCGACAACGTGGCCCGCCCCTGCCTGCTGGACCTCGCCGCGCTGAACCTGAAGCTGGCGGA CACCCACCAGAATCCGGTCGGCGTGCTGAAGGGCATCGCCAATACCTGGATGAGTTACCGCGGCAGCGACATCAGCAGCGCGACCACCGCGGGCACGCTC TACAGCGTGCAGTGGAACAACCTGCCCATTCCCTCGGGCGGCCAGGTCAACGAAGCGGAAAGCCCCGAATACGGCAACCTGATGCGCGGCATCGGCACCT TCTACTACGAGACCAATAGCGTCGCGCGCAACCAGACCAACAGCGAAACCGTCCTGCAGACCGTTCTCGCCCGTCTCTATACCAACTGATCGAGCCTCGC
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DNA Sequence for Gene |
>N297_4704
ATGAAATCGGTACTCCACCAGATCGGCAAGACCTCGCTGGCAGCCGCGCTCAGCGGCGCCGTCCTGCTCTCCGCCCAGACCACCCACGCCGCCGCCCTGT CGGTCAGCCAGCAGCCGCTGATGCTGATCCAGGGCGTCGCCCCGAACATGCTGGTGACTCTCGACGACTCGGGCAGTATGGCGTTCGCCTATGCGCCAGA CAGCATTTCCGGCTATGGAAACTATACGTTCTTCGCGTCGAACAGCTTCAACCCGATGTACTTCGATCCGAACACGCAATACAAGCTTCCGAAGAAACTC ACACTGGTGAACGGACAGGTACAGATCCAGGATTATCCGGCCCCCAACTTCTCCTCTGCCTGGCGCAATGGCTTCACTCGCAGCGGGAGTATCAATCTGT CGAACAGCTACAAGGTCACCATCGAGTACGGCAGGGGATATGATAAGGAGTCGACGATAAAAGCCGACGCTGCCTACTACTATGACTTCACGGGCTCATC CAGTTGCAACCGCACCAATCAGGCATGCTACACCCGCCGTTATGTGAGCACAGAGCAAAGGCAGAACTTCGCCAACTGGTATTCGTTCTACCGCACCCGC GCCCTTGCCACTCAGACCGCCGCCAACCTGGCGTTCTACAGCCTGCCTGAAAACGCTCGGGTGAGCTGGCAATTGCTGAACGACTCGAACTGCAACCAGA TGGGCAGCGGCTCCAGCTCCGGCAACTGTTTCAGCAACTATCTACGGGACTTCACCGGTCAACACCGGGTGAACTTCTTCAATTGGCTGGAAAAACTTTC GGTCAATGGTGGTACGCCACTGCGCCAGGCGATGACCCGGGCAGGCGAGTTTCTCAAGAAGACCGGCGTCAACGGTCCCTATGCCTATCGCCCAGGGACC CAGACCGCGCCCGAGTACAGTTGCCGGGGCAGCTATCATATCCTGATGACCGACGGTCTCTGGAACAACGACTCGGCCAACGTAGGCAATGCCGACAGCA CCGCTCGTAACCTCCCCGACGGGAAGAGCTATAGCAGCCAGACACCCTACAGGGACGGTACGTTCGATACCCTGGCCGACCAGGCCTTCCATTACTGGGC CACCGATGCCCGGCCGGATATCGACGACAATATCAAACCGTACATTCCCTACCCGGACCAGGCCAATCCCTCGGCGGAATACTGGAATCCCCGCAACGAT CCGGCAACCTGGCAACACATGGTGACCTACACCCTGGGCCTGGGCCTGACCACCAGCCTCACCAGTCCGAGATGGGAAGGCTCCACCTTTTCCGGTGGCT ACAACGATATCGTGGCTGGCAACCTGAGCTGGCCCCGCGCGTCGAACAACGACTCCAACAACGTCTACGATCTGTGGCACGCCGCAGTGAACTCCCGGGG CGAGTTCTTCAGCGCCGACTCGCCGGACCAACTGGTCGCGGCCTTCCAGGACATCCTCAACCGAATTTCGGGCAAGGACCTGCCGGCATCCCGCCCCGCC ATCAGCTCGTCCCTGCAGGAAGACGACACTGGCGACAAGCTGACCCGCTTCGCCTACCAGACCAGCTTCGCCAGCGACAAGAACTGGGCTGGCGACCTGA CCCGCTACAGCCTGACCACCCAGGACAAGGCCACCGTGCAGACCAAGCTGTGGAGCGCGCAGAGCATCCTCGACGCGATGCCCAACGGTGGAGCTGGCCG CAAGATCATGATGGCCGGATCCGGTACCTCGGGCCTCAAGGAGTTCACCTGGGGCAGCCTCAGCGCCGACCAGCAGCGGCAGTTGAACCGCGATCCGGAC CGCAACGATGTCGCCGACACCAAGGGCCAGGACCGCGTGGCCTTCCTGCGCGGCGATCGCCGCAAGGAGAACAGCGACAACTTCCGCACCCGCAACTCGA TCCTCGGCGATATCATCAACTCCTCGCCGGCGACGGTCGGCAAGGCCCAGTACCTGACCTACCTGGCCCAGCCGATCGAGCCCAGCGGTAACTACTCCAC GTTCGCAGAAGCACAGAAAACCCGTGCCCCGCGGGTATACGTCGGCGCCAACGACGGCATGCTGCACGGTTTCGATACCGACGGTAACGAGACCTTCGCC TTCATCCCAAGCGCGGTCTTCGAGAAGCTCCACAAGTTGACCGCCCGCGGCTACCAGGGCGGCGCCCACCAGTTCTACGTCGACGGTTCGCCGGTGGTCG CCGACGCCTTCTTCGGCGGCGCCTGGCATACCGTGCTGATCGGCAGCCTGCGCGCCGGCGGCAAGGGCCTGTTCGCCCTCGACGTGACCGATCCCGCCAA CATCAAGCTGCTCTGGGAAATCGGCGTGGACCAGGAGCCCGACCTTGGCTACAGCTTCCCCAAACCCACGGTCGCCCGGCTGCACAACGGCAAGTGGGCC GTGGTCACCGGAAACGGTTATTCCAGCCTGAACGACAAGGCCGCGCTGCTGATCATCGACCTGGAGACCGGGGCCATCACCCGCAAACTGGAAGTCACCG GCAGGACCGGCGTACCCAACGGCCTATCCAGCCCTCGCCTGGCAGACAACAACAGCGACGGCGTAGCCGACTACGCCTACGCCGGCGACCTGCAAGGCAA CCTCTGGCGCTTCGACCTGATCGCCGGCAAGGTCAACCAGGACGATCCGTTCAGCCGAGCCAACGACGGCCCGGCGGTGGCCTCGAGCTTCAGGGTGTCT TTCGGTGGCCAGCCGCTCTATTCGGCAGTCGACTCCGCCGGCGCGGCGCAAGCGATCACCGCCGCGCCCTCGCTGGTTCGCCATCCGACACGCAAGGGCT ACATCGTGATCTTCGGTACCGGCAAGTATTTCGAGAACGCCGACGCCCGGGCCGATACCAGCCGCGCCCAGACGCTCTACGGCATCTGGGACCAGCAAAC CAAGGGCGAAGCCGCGGGCAGCACACCCCGACTGACGCGCGGCAACCTGCAGCAGCAGACCCTGGACCTCCAGGCCGACTCGACCTTCGCCTCGACCGCT CGCACCATTCGCATCGCCAGTCAGAACCCGGTCAACTGGCTGAACAATGACGGCAGCACCAAGCAGTCCGGCTGGTATCTGGACTTCATGGTCAACGGCA CCCTGAAGGGCGAGATGCTGATCGAGGACATGATCGCCATCGGCCAGGTGGTGCTGCTGCAAACCATCACCCCGAACGATGACCCCTGTGCCGACGGCGC CAGCAACTGGACCTATGGCCTCGATCCCTATACCGGCGGTCGCACCAGCTTCACCGTGTTCGACCTGGCACGCCAGGGCGTCGTGGACTCGAAATCCGAC TACAGCTACAACAAGCAGAACGTCGCGGTATCCGGTACCGAGCAGAAAGGCCTGGGAGGCTTGACGCTGAGCACCAACGAACAGGGCAATCCGGAAGTCT GCTCCTCGGGCGAATGCCTGACCGTGAACCCCGGTCCGAACACCCGTGGCCGCCAGAACTGGCGCCCCATCGAAGGAAAGAACTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
TATGAAAGTGCTGCCTATGCTGCTGGCCCTGGCCGTTCCCGGCCTCTGCTGGGCCGAAGATCCCCAGACCTTCGAAGGCGCTGGCGTGGTCTTCGAAGTC CAGGTCGAGAAGAACCTGGTGGACATCGACCACCGGCTCTACCGCCTGCCCAACAGCACCGTCAGGAACGGCATGCCCAGCCTGTTCCAGGTCAAGCCGG GCTCCGTGGTGTCCTACTCTGGCACCGTCAGCCAGCCGTGGTCCACCATCACCGATATCTACATTCACAAACAGATGAGCGAACAGGAGCTGGCCGAGAT GATCGAGAAAGAACAGCCCCGCCAGGACGGGGAGGAGCAGCCCCGATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGG TGATCGGCATCCTCCTCGGCATCGCCATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCCCTGCTCTCGGACGCGGCCGC
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Amino Acid Sequence |
>neisseria PilC beta-propeller domain protein
MKSVLHQIGKTSLAAALSGAVLLSAQTTHAAALSVSQQPLMLIQGVAPNMLVTLDDSGSMAFAYAPDSISGYGNYTFFASNSFNPMYFDPNTQYKLPKKL TLVNGQVQIQDYPAPNFSSAWRNGFTRSGSINLSNSYKVTIEYGRGYDKESTIKADAAYYYDFTGSSSCNRTNQACYTRRYVSTEQRQNFANWYSFYRTR ALATQTAANLAFYSLPENARVSWQLLNDSNCNQMGSGSSSGNCFSNYLRDFTGQHRVNFFNWLEKLSVNGGTPLRQAMTRAGEFLKKTGVNGPYAYRPGT QTAPEYSCRGSYHILMTDGLWNNDSANVGNADSTARNLPDGKSYSSQTPYRDGTFDTLADQAFHYWATDARPDIDDNIKPYIPYPDQANPSAEYWNPRND PATWQHMVTYTLGLGLTTSLTSPRWEGSTFSGGYNDIVAGNLSWPRASNNDSNNVYDLWHAAVNSRGEFFSADSPDQLVAAFQDILNRISGKDLPASRPA ISSSLQEDDTGDKLTRFAYQTSFASDKNWAGDLTRYSLTTQDKATVQTKLWSAQSILDAMPNGGAGRKIMMAGSGTSGLKEFTWGSLSADQQRQLNRDPD RNDVADTKGQDRVAFLRGDRRKENSDNFRTRNSILGDIINSSPATVGKAQYLTYLAQPIEPSGNYSTFAEAQKTRAPRVYVGANDGMLHGFDTDGNETFA FIPSAVFEKLHKLTARGYQGGAHQFYVDGSPVVADAFFGGAWHTVLIGSLRAGGKGLFALDVTDPANIKLLWEIGVDQEPDLGYSFPKPTVARLHNGKWA VVTGNGYSSLNDKAALLIIDLETGAITRKLEVTGRTGVPNGLSSPRLADNNSDGVADYAYAGDLQGNLWRFDLIAGKVNQDDPFSRANDGPAVASSFRVS FGGQPLYSAVDSAGAAQAITAAPSLVRHPTRKGYIVIFGTGKYFENADARADTSRAQTLYGIWDQQTKGEAAGSTPRLTRGNLQQQTLDLQADSTFASTA RTIRIASQNPVNWLNNDGSTKQSGWYLDFMVNGTLKGEMLIEDMIAIGQVVLLQTITPNDDPCADGASNWTYGLDPYTGGRTSFTVFDLARQGVVDSKSD YSYNKQNVAVSGTEQKGLGGLTLSTNEQGNPEVCSSGECLTVNPGPNTRGRQNWRPIEGKN
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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