Pseudomonas chlororaphis PA23, EY04_RS29540
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis strain PA23, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GGCGACATCCTCGACCTGGCCCGGCACTTCGCCGACAAGGCCTGCGCCTTCCTGCAGCGCGACCCGGTGAGCTGGTCGGAAACCGCCCTCAATCACCTGT CGGGCTACACCTTCCCGGGCAACGTGCGCGAGCTCAAGGGCCTGGTGGAACGGGCGGTGTTGTTGTGCGAAGGCGGTGAGCTGCTGGCCGAGCATTTCTC CCTGAGCAGCGAAGCGCTGCCGGAAGAACCCGGCCTGAACCTGCGCGAACGCCTGGAGAAAGTCGAGCGCCACCTGCTGCTCGATTGCCTGCGCAAGAAC GACGGCAACCAGACCCTGGCGGCCCGCGAGCTGGGGCTGCCCAGGCGCACGCTGCTGTACCGCCTCGGGCGGTTGAACATCAATCTTGGCGACTTCGAGG GTTAGCGCGACATGACTTTCCCCAGCGCCTTTTTCGTTTCGCCAAGCGTCGCCCGCCAGGGTCGGCGCTTTGTGCATTGTCTACCCATGGAGACCCTCTG
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| DNA Sequence for Gene |
>EY04_RS29540
ATGTCTGTTCGTCACTGGCAAGCCGCCCTGCTGGCTCTGATCGTTCTCAGCGGCCTCGGCGGCTGTAGCGGTAATTACAAATTCAACGACAACACCTATC GCCCATTGGGTGATCCGCAGGCGGTCAATCGCGGCAAGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCGCAAGGAGCATCATCATGGAACTGGTTTTCGAAATGCTGAACACCAAGCAGTTCGTGCCCACGGAGTTGAGCAGCAAAACCTTCAAGCAGGCCGGTGG GGTGATCGGACGGGGCGAGGATTGCGACTGGATCATTCCGGACCGCAAGCGTCATCTGTCCAATCACCACGCGATCGTCAGCTACCGCGACGGAATGTTT TTCCTCACCGATACCAGCAGCAACGGTATCCAGGCCAGTGACAGCGGCGCGCGCCTGCGCAAGGGCGAGCCGCAGCGTATCGAGCACGGCAGCGTCTATG TGCTGGGGGATTTCGAGATCCGCGCGCGCCTGGTGCGCGATCCGGCGACCTTCGACGCCGAAGTCGGCCGTCCGCAAACCGCTGGCAGCATCATTCCCGA TGACGCATTCCTCGACCTCGACCCGCTCAACGCGCTGGACCAGCAGGAACGGGTGTATTCGGAAATCGACGAACTGACTGCGCTCAACACGCCGCGCCAG
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| Amino Acid Sequence |
>type VI secretion protein
MSVRHWQAALLALIVLSGLGGCSGNYKFNDNTYRPLGDPQAVNRGK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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