Pseudomonas chlororaphis PA23, EY04_RS29525

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas chlororaphis strain PA23, complete genome. [Details]
DNA Sequence Upstream of Gene
ACCTGCACCAACCAGAACCTGCCGCGCCGGCTCAAGCTCGGCGAGATCAACCAGGCGTGCGAAGAAACCCCGGAATTCCTCAGTTTCCGCAACATCACCC CGGCCACTTCGAGCTACGCGCCACCGCTGAATCGCGACTTCCTGTGGAAGCTGATCAGCAACATGTCGCTCAACTATCTGTCGCTGGCCAACGTCGATGC GCTCAAGGTGATTCTCGAAACCTACGACTTGCCGCGCTACTACGACCAGCACCTGGAAAAGGTCAGCAAGCGCCTGCTGGGCGGGCTCAAGTCGATCCGC CACGAGCATGTCGACCGGCTGCACCGGGGCCTGCCGCTGCGCGGTCTGCGCACCGAGCTGACCATCGATCCGGAAGGTTATATCGGTGAAGGCGACATGT TCGTCTTCGCTTCGGTTCTCAACGAGTTTTTCGCTCTTTACGCCAGTCTCAACTCGTACCACGAGCTGCGGGTAAAAAGTACACAGGGAGAGGTGTACCA
DNA Sequence for Gene
>EY04_RS29525
ATGGACACCACGTATGGGTCTACAGCCCCTGCTTTAAGCGGGCTGACCCGGGTCATCCGCGAGTACTCGCTGTTCCAGGCCGTGCTGCTGGTAGTGGACC GGCTGCGCGATTCCCATCCGGGCCTAAGCGAAGAGGATCTCTACGACCAGCTGGAATTCCAGGCCAATCCGAGCCTGGGTTTCCCTGGCAGCGACGTCGA TCGCGTGGAGTTTTTCGAAGAGCACGGGCAGATGCGCGCGCGCCTGCGCTTCAACCTGATCGGGCTGTTCGGCTCCGGCTCGCCGCTGCCGGCGTTCTAC GGTGAGCAGGCCCTGGGTGACAGCGAGGACGGCAACCCGACCCGCAATTTCCTCGACCTGTTCCACCATCGCCTGCAGCGGCTGATGCTGCCGATCTGGC GCAAGTACCGCTACCGCGCCAGCTTCAAGAGCGGCGCGCTCGACCCGTTTTCCGCCCAGCTGTTCGCCCTGATCGGCCTCGGCGGCGAAGACATCCGCAA GGCCAAGGAACTGAACTGGAAGCGCCTGCTGCCGTACCTCGGCCTGCTCAGCCTGCGGGCCCACTCGGCGGCGCTGATCGAGGCCGTGCTGCGCTACTAC TTCAAGCATGCGGACCTGGTGATCGAGCAGTGCATCGAGCGTCGGGTGGAGATTCTTGAGGAGCAACGCAACCGCCTGGGTCGCGCCAACAGCCAGCTCG GCGAAGACCTGGTGCTGGGCGAGCGGGTGCGCGACCGCAGCGGCAAGTTCCGCATCCATATCCGCCAGCTCGACTGGCAGCGCTTCCACGAATTCCTGCC GATCGGTTTCGGCTACCAGCCGCTGTGCGCGCTGGTGCGGTTCACCCTGCGTGACCCGCTGGACTACGACATTCGCCTGGTCCTGCGCCAGGAAGAAATC CGCGAACTGCGCATCGGTGAGCAGAACGCCTGTCGCCTGGGGTGGACCAGTTGGCTCGGCCGCGAACGCGCGGACGGCGTGGTGACCCTGGGCAGCAAAA TTCATTAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GGACAGATGACATGATCAACGTAGACCTGCAGCAACTGATCCAGGCGCTGGACGCCGAAACCCGCCGTGACCTGGAAAGCTCCGCCGAACGCTGCGTCGC CCGTGGCGGCAGCAAGATCCTGGTCGAAGACCTGTTGCTGGGTCTGCTGGAGCGTCCGCAAGGCCTGCTCGCCCGCGCGCTGCAGGACGCCGAAGTGGAT GCCGGCGAACTGAGCGCGGCACTGCAATCGCGGGTCGAGCACAGTGCCTCGCGCAACCCGGTGTTCGCCCCGGAACTGGTGCAATGGCTGCAGGACGCCT TGCTGGTGGCCAACCTCGAGCTGGGCCAGAGCCAGGTCGAGCAGGCGGCGCTGATCCTCGCCCTGCTGCGCAACCCGATGCGCTATGCCGGTAGCCGCTA CCAGCCGCTGCTGGCCAAGCTGAACATCGAACGGCTGAAGGATTTCGCCCTGTCGCAGAAGGAAGAGCCGGCCAGCGGCAAGCCGGCGGCGCCGGGCGAA
Amino Acid Sequence
>type VI secretion protein
MDTTYGSTAPALSGLTRVIREYSLFQAVLLVVDRLRDSHPGLSEEDLYDQLEFQANPSLGFPGSDVDRVEFFEEHGQMRARLRFNLIGLFGSGSPLPAFY GEQALGDSEDGNPTRNFLDLFHHRLQRLMLPIWRKYRYRASFKSGALDPFSAQLFALIGLGGEDIRKAKELNWKRLLPYLGLLSLRAHSAALIEAVLRYY FKHADLVIEQCIERRVEILEEQRNRLGRANSQLGEDLVLGERVRDRSGKFRIHIRQLDWQRFHEFLPIGFGYQPLCALVRFTLRDPLDYDIRLVLRQEEI RELRIGEQNACRLGWTSWLGRERADGVVTLGSKIH
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site