Pseudomonas chlororaphis PA23, EY04_RS29520

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas chlororaphis strain PA23, complete genome. [Details]
DNA Sequence Upstream of Gene
TACTTGTTGCGAATAAAGTGAATAAATATTTATCGCAGCGAATCGCAAAGCAAGGGGCAAAGGGTGAACTCAATGACTAAGTTCGCCGGCTTCCTCCTGT TTCCTGTGACCTTGAGACGCGGCGCAACAGGTCTACAACAAACCATTTGTCTGTCGCGAACCGGGGTTCAATAAGTGATGGATCTTAAAGGTTATTTGGC GGTATTGGCGGATAGCGACCTGTTTGGCGTTTTGGCAATCGTCTGTTTTTTTGTGGCGATTGGTGGCCTGTTTGCCGGTATCAGGAATTCCAAGGGGCAT AGGGCTCTGGTCTTTCTATGTCTGATGTCTGTTCCGTTGCTTGAGGCAGTTGGTAGCTACTTCGCTAATTTGCCTCCAGCCTGAATGCCGATTTTGGGTT GGGCTGAATGAACTTCCTGAATCAACTGCCCGAATGAATATGAAGACTACGTCGACGCACATACCGAGTTCACCCGAATTCAACACCAAGCAGGTAACCC
DNA Sequence for Gene
>EY04_RS29520
GTGTCCTTTAACCACTACTACCAAAGCGAACTCACCGCGCTGCGCCAGCTGGGTCGCCGTTTCGCCGAGCGTAGTCCGGCGCTGGCACCGTTTCTCGGGC AGGCCGGGCGGGACCCGGATGTGGAGCGCCTGCTCGAAGGTTTCGCGTTCCTCACCGGTCGCCTGCGGCAGAAACTCGATGACGAGCTGCCGGAGCTGAG CCATTCGCTGATGCACCTACTGTGGCCGAACTACATGCGGCCGTTGCCGGCGTTCAGCATTTTGCAGTTCGACCCGCTGAAGCAGTCCGGGCCGGCCCTG CGTGTGGAGCGTGATACGCCGGTGGAGAGCAAGCCCATCGATGACGTGCGCTGCCGCTTCCGTACCTGCTACCCGACCGAAGTCCTGCCGCTGGACCTGA CGGCGCTGAACTACTCGGTAAAAGGCGACGGCGCACTGCTCAGCCTACGCCTGGAGATGAGCTGCGACGGTCACCTCGGCGAGCTGAACCTGAGCCGCCT GCGCCTGCACCTGGCGGGCGAGCGCTATATCAGCCAGATGCTCTACCTGAGCCTGCTGCGCAACCTCGAAGGCATCGAGCTGGTGCCGCTGGGCATGGAC GGCAAGCCGTTCCCGGGTGTCAGCGGCAACGCCATGTCGTTCAAGATGCCGGGCAACCGCGTGCAGCCGGTGGGCTTTGCCGAAGAAGAGGCGTTGATTC CGTATCCGCTCAACACCTTCCGCGGTTATCGCTATCTGCAGGAGTATTTCGCCTTCCAGGACAAGTTCCTGTTCGTCGACCTGAACGGCCTGGACCTGCT CAAGTCGCTGCCGGAGGACACCCTCAAGCAGTTGCACGGCCTTGAGGTGCGCTTCGACATTCGCAAGAGCGGCATCCAGCGCCTGCGGCCGACCCTGGAC AACGTGAAGCTGTATTGCACGCCGATCGCCAACCTGTTCAAGCACGACGCGCTGCCGATCCGCCTCGATGGCAAGCAGGACGAGTACCTGCTGCTGCCGG CCGAGTACGACCTGGAAAACTGCGGCGTGTTCTCGGTGGAAACCGTCACCGGCTGGAAGCCCGGCGGCCTGGGTTACCAGGAATATGTGCCGTTCGAATC CTTCGAGCACGACCCGAGTTTCGACGTCCCGCAAAGCCGCCCGCACTACAGCATCCGCCAGCGCTCCTCGTTGCTGCACGACGGCCTGGACACCTACCTG AGCTTCGGCATCCGCCACACCGAGGCCCACGAAACCCTGTCCATCGAGCTGACCTGCACCAACCAGAACCTGCCGCGCCGGCTCAAGCTCGGCGAGATCA ACCAGGCGTGCGAAGAAACCCCGGAATTCCTCAGTTTCCGCAACATCACCCCGGCCACTTCGAGCTACGCGCCACCGCTGAATCGCGACTTCCTGTGGAA GCTGATCAGCAACATGTCGCTCAACTATCTGTCGCTGGCCAACGTCGATGCGCTCAAGGTGATTCTCGAAACCTACGACTTGCCGCGCTACTACGACCAG CACCTGGAAAAGGTCAGCAAGCGCCTGCTGGGCGGGCTCAAGTCGATCCGCCACGAGCATGTCGACCGGCTGCACCGGGGCCTGCCGCTGCGCGGTCTGC GCACCGAGCTGACCATCGATCCGGAAGGTTATATCGGTGAAGGCGACATGTTCGTCTTCGCTTCGGTTCTCAACGAGTTTTTCGCTCTTTACGCCAGTCT CAACTCGTACCACGAGCTGCGGGTAAAAAGTACACAGGGAGAGGTGTACCAATGGACACCACGTATGGGTCTACAGCCCCTGCTTTAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCGGGCTGACCCGGGTCATCCGCGAGTACTCGCTGTTCCAGGCCGTGCTGCTGGTAGTGGACCGGCTGCGCGATTCCCATCCGGGCCTAAGCGAAGAGGA TCTCTACGACCAGCTGGAATTCCAGGCCAATCCGAGCCTGGGTTTCCCTGGCAGCGACGTCGATCGCGTGGAGTTTTTCGAAGAGCACGGGCAGATGCGC GCGCGCCTGCGCTTCAACCTGATCGGGCTGTTCGGCTCCGGCTCGCCGCTGCCGGCGTTCTACGGTGAGCAGGCCCTGGGTGACAGCGAGGACGGCAACC CGACCCGCAATTTCCTCGACCTGTTCCACCATCGCCTGCAGCGGCTGATGCTGCCGATCTGGCGCAAGTACCGCTACCGCGCCAGCTTCAAGAGCGGCGC GCTCGACCCGTTTTCCGCCCAGCTGTTCGCCCTGATCGGCCTCGGCGGCGAAGACATCCGCAAGGCCAAGGAACTGAACTGGAAGCGCCTGCTGCCGTAC
Amino Acid Sequence
>type VI secretion protein
MSFNHYYQSELTALRQLGRRFAERSPALAPFLGQAGRDPDVERLLEGFAFLTGRLRQKLDDELPELSHSLMHLLWPNYMRPLPAFSILQFDPLKQSGPAL RVERDTPVESKPIDDVRCRFRTCYPTEVLPLDLTALNYSVKGDGALLSLRLEMSCDGHLGELNLSRLRLHLAGERYISQMLYLSLLRNLEGIELVPLGMD GKPFPGVSGNAMSFKMPGNRVQPVGFAEEEALIPYPLNTFRGYRYLQEYFAFQDKFLFVDLNGLDLLKSLPEDTLKQLHGLEVRFDIRKSGIQRLRPTLD NVKLYCTPIANLFKHDALPIRLDGKQDEYLLLPAEYDLENCGVFSVETVTGWKPGGLGYQEYVPFESFEHDPSFDVPQSRPHYSIRQRSSLLHDGLDTYL SFGIRHTEAHETLSIELTCTNQNLPRRLKLGEINQACEETPEFLSFRNITPATSSYAPPLNRDFLWKLISNMSLNYLSLANVDALKVILETYDLPRYYDQ HLEKVSKRLLGGLKSIRHEHVDRLHRGLPLRGLRTELTIDPEGYIGEGDMFVFASVLNEFFALYASLNSYHELRVKSTQGEVYQWTPRMGLQPLL
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site