Pseudomonas chlororaphis PA23, EY04_RS29495

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas chlororaphis strain PA23, complete genome. [Details]
DNA Sequence Upstream of Gene
CGCATCAACGTCACCTTCAAACCCGCCACCGGCGGTGCTCAGGAAGAGATTGAACTGCCGTTGAAGCTACTGGCAATCGGTGATTACACCCAGCGCGTGG ACGAGCGCAAAGTGGAAGACCGCAAGCCGATCAGCATCGACAAAATGACGTTCGACGAAGTGCTGGCCAAGCAGGAGCTGAGCCTGACGCTGAGCGTGCC TAACCGTCTTCAGGAAGAGGGCGACACCGAAGAGCTGGCGGTCAAGCTGCGCGTCAACTCGATGAAGGACTTCAACCCGGCCAGCCTGGTCGAGCAAGTG CCTGAGCTGAAAAAACTGATGGAACTGCGCGACGCGCTGGTGGCCCTCAAGGGTCCGCTGGGTAACGCCCCTGCATTCCGTAAAGCCATCGAAGGCGTAC TCGCCGACGACGAATCGCGCGGTCGTGTACTCGGTGAGCTGGGCCTGAACGCCGCAGCCACCGAAGCCTGAGTCTCTATCAGTCAAGGAAGCCAAACACT
DNA Sequence for Gene
>EY04_RS29495
ATGAGCACTAGTGCAGCACAACAGAAAAGTAACGAGAACGGCGAGTACAGCATTCTCGACAGTATCATCGCCGAAACCCGCCTGACTCCGGACGACGAAG CCTACGACATCGCCAAGCGCGGCGTGTCGGCCTTCATCGAAGAGCTGCTCAAGCCTCAGAACGACGGCGAGCCGGTCAAGAAAGCCATGGTTGACCGCAT GATCGCCGAGATCGATGCCAAGCTCAGCCGCCAGATGGACGAAATCCTTCACCACGAAGACTTCCAGTCCCTGGAATCGGCCTGGCGTGGCCTGCAGTTG CTGGTCGACCGCACCAACTTCCGCGAAAACATCAAGATCGAAATCCTCAACGTCTCCAAGCAGGACCTGCTGGACGACTTCGAAGATTCGCCGGAAGTGA TGCAGTCTGGCCTGTACAAGCACATCTACACCGCTGAATACGGCCAGTTCGGTGGCCAGCCGGTGGGCGCGATCATCGCCAACTACTTCATGTCGCCAAG CTCGCCAGACGTGAAGCTGATGCAGTACGTGTCCAGCGTTGCCTGCATGTCCCACGCGCCGTTCATCGCCGCGGCCGGTCCGAAATTCTTCGGCCTGGAA AGCTTCACCGGCCTGCCGGACCTGAAGGATCTGAAAGACCACTTCGAAGGCCCGCAGTTCGCCAAATGGCAGAGCTTCCGCCAGTCGGAAGACTCGCGCT ACATCGGCCTGACCGTACCGCGCTTCCTGCTGCGCAACCCGTACGATCCGGAAGAAAACCCGGTCAAATCCTTCGTCTACAAGGAAACCGTTGCCAACAG CCACGAGCACTACCTGTGGGGCAACACCGCGTACGCGTTCGGTACCAAGCTGACCGACAGCTTCGCCAAGTTCCGCTGGTGCCCGAACATCATCGGCCCG CAGAGCGGTGGCGCGGTAGAAGACCTGCCGCTGCACCACTTCGAAAGCATGGGCGAAATCGAAACCAAGATCCCGACTGAGGTCCTGGTTTCCGACCGTC GTGAATACGAGCTGGCCGAGGAAGGCTTCATCTCCCTGACCATGCGCAAAGGCAGCGACAACGCGGCGTTCTTCTCCGCCAGCTCGGTGCAGAAGCCGAA GTTCTTCGGCATCAGCGCCGAAGGCAAGGCTGCGGAGCTGAACTACAAGCTCGGCACCCAGCTGCCGTACATGATGATCGTCAACCGCCTGGCTCACTAC CTGAAAGTGCTGCAGCGCGAGCAACTCGGTTCGTGGAAAGAACGTACCGACCTCGAGCTGGAACTCAACAAGTGGATCCGCCAGTACGTCGCCGACCAGG AAAACCCGAGCGCCGAAGTCCGTGGCCGCCGTCCGCTGCGTGCCGCGCAGATCATCGTCAGCGATGTGGAAGGTGAGCCGGGCTGGTACCGCGTCAGCCT GAACGTGCGCCCGCACTTCAAGTACATGGGGGCCGATTTCACCCTGTCGCTGGTTGGCAAGCTGGACAAAGAGTAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
CCAGGAGCTAGGTCATGACCGGATACGGCAGCCTTTTCGAACGCCTGAGTGGCGAGGCCGACAAGCGTGTCGGCTGGAGCCGCGAGGTTTCCGCCATGGC GTCGGTGGCTGCCCATCTGGGCAAGATGCTCAGCACCCGTGCGGGCAGCGTGCAGACGCTGTCCGATTACGGGTTGCCCGATCTCAACGACATGCGCCTG AGCCTGCACGACGCCCTGAGCCAGGCTCGCCTGGCCATCGAAAGCTTCATCGAAGCCTACGAACCGCGTCTGAGCAATGTGCGTGTCGTTTCCCTGCCGC GCGATCACGACCAGCTCAAGCTGGCTTTCAATATCGAAGGCCTGCTTGAGGTGGACGGGTTCAAGCGCCAGGTCAGTTTTTCCGCGCGCCTGGATGGCAG CGGACAGGTCAAGGTGACATGAAGATGAGCGAAGACCATTTCATTCGTTTGGGCGAGGCGGCAAGTCGCGCCGTTGAGCCAGTCAACCATGTTTCATTCG
Amino Acid Sequence
>type VI secretion protein
MSTSAAQQKSNENGEYSILDSIIAETRLTPDDEAYDIAKRGVSAFIEELLKPQNDGEPVKKAMVDRMIAEIDAKLSRQMDEILHHEDFQSLESAWRGLQL LVDRTNFRENIKIEILNVSKQDLLDDFEDSPEVMQSGLYKHIYTAEYGQFGGQPVGAIIANYFMSPSSPDVKLMQYVSSVACMSHAPFIAAAGPKFFGLE SFTGLPDLKDLKDHFEGPQFAKWQSFRQSEDSRYIGLTVPRFLLRNPYDPEENPVKSFVYKETVANSHEHYLWGNTAYAFGTKLTDSFAKFRWCPNIIGP QSGGAVEDLPLHHFESMGEIETKIPTEVLVSDRREYELAEEGFISLTMRKGSDNAAFFSASSVQKPKFFGISAEGKAAELNYKLGTQLPYMMIVNRLAHY LKVLQREQLGSWKERTDLELELNKWIRQYVADQENPSAEVRGRRPLRAAQIIVSDVEGEPGWYRVSLNVRPHFKYMGADFTLSLVGKLDKE
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site