Pseudomonas chlororaphis PA23, EY04_RS29135
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Molecular Function | GO:0016787 | hydrolase activity |
Inferred from Sequence Model
Term mapped from: InterPro:PF01979
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Molecular Function | GO:0016810 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds |
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:2.30.40.10
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| MetaCyc | UMP biosynthesis I | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| KEGG | pch00240 | Pyrimidine metabolism | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| MetaCyc | UMP biosynthesis II | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| MetaCyc | UMP biosynthesis III | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| KEGG | pch01100 | Metabolic pathways | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| PANTHER | PTHR43668 | ALLANTOINASE | - | - | 1 | 431 | 1.2E-84 |
| CDD | cd01318 | DHOase_IIb | - | - | 52 | 423 | 0.0 |
| Gene3D | G3DSA:3.20.20.140 | - | - | - | 56 | 412 | 4.7E-129 |
| Pfam | PF01979 | Amidohydrolase family | IPR006680 | Amidohydrolase-related | 52 | 425 | 5.6E-11 |
| Gene3D | G3DSA:2.30.40.10 | Urease, subunit C, domain 1 | IPR011059 | Metal-dependent hydrolase, composite domain superfamily | 6 | 428 | 4.7E-129 |
| SUPERFAMILY | SSF51338 | Composite domain of metallo-dependent hydrolases | IPR011059 | Metal-dependent hydrolase, composite domain superfamily | 1 | 434 | 2.37E-25 |
| SUPERFAMILY | SSF51556 | Metallo-dependent hydrolases | IPR032466 | Metal-dependent hydrolase | 55 | 371 | 5.45E-89 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.