Pseudomonas chlororaphis PA23, EY04_RS20045
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis strain PA23, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GGCGAGATGCGCCAGATCACCCATCAGGGGCCAATGTTATTGCAGGCCCAGAAAAACAACATCCGCGTGGAGGCGGATCAGAGCGTGGAAGTCAGCGCGA GCAAGCAACATGTGCTGATTTCGGCCAAGGAGCACATCACGCTGATGTGTGGTGGTGCCTACCTTACCCTCAAGGGCGGCAACATCGAATTGGGGATGCC CGGCAACTTCATTGTCAAGGCGGCCAAGCACAGCCTGGTCGGCCCTGCTCACGCCTCAACCACCTTCAACTCCTGGGAGTCCACGCCGTTCGACGACGCC TTTGTCCTGCGGGACGAAAACACCCTGGAGCCCCTGGCCAATACGGCCGTGGAACTGCTGCGCGGTGATGGGGCGCCGCTCAAGCTCACTACCGATGCCC AGGGGCGATTGCCGAGGCAACAGGACCTGGCAATGGATAGGGTTCAAATACGGGTTCTGGCCAAGGGAGCCAGTATCAAGGGTGACAGGGAGTCCACCAC
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| DNA Sequence for Gene |
>EY04_RS20045
ATGAGCAGCGAAGCGAATACCCAGGAAGTGATAGTCCCGCGCGCGCGTGACAACCTGGGGCGTCCCATCTACACCAGCCAGCTCACCCGCACTGAGGATC AGCGCGACAAGGTATTGCTGGTGAAGCAGCAGGTCACCATCCCGGTAATTTTCATTCCCGGCATCATGGGGACCAACCTGCGCAACAAGAAGACCTTGAA CAGTGTCTGGAGCCCGCCCAATGCATCGTTCAGCCTTGGCGATATCGCGGGTGTCCTGGGGGCATTATTTGTCTGGGGGTTCCGAGGTCCGAAAAGACGA CAGGAGTTGCTCAAGCCTGATGATGTCGAGGTCGATGATCGTGGATCTGTCGATCCCGGTGCATCGGGGCTGAGCGAAGAGGCCGCGCGGATGCGCGGCT GGGGCAAGGTCATGCGCACCTCCTACAACCCGATCATGGCTTTGCTGGAAAGCCGGCTGGACCATATCGTCAAACAGCGCGAGCTTCAGGGATGGTGGCA AGCTGAAAGCCTGCGCTCGCCTTCCGACTATGGCGAAGAGTTGGGCAGTGCCGCTCCCCTTAGCAGCGAGGAGCTGACTGCCGCGGGCAAGTATCAGTTC GATATCTGGTGCGGGGGCTACAACTGGCTGCAATCCAACCGCCAATCCGGCCAGGACGTGCGCGACTATATCGAGAACACCGTGCTGCCTTTCTATCGCG AGAAGGGCGGTGTCGATCCTGAGCAACTGGCCCGGACCAAGGTCATTCTGGTCACTCACTCAATGGGCGGTCTGGTTGCCCGATCGCTGACCCAGCTCCA TGGCTATGAGCGGGTGCTGGGCGTGGTTCATGGCGTGCTGCCCGCGCTTGGCTCGTCGGCCATCTATCACCACGTGCGTTGTGGCTATGAAGGGGCACCC CAGATCGTCCTGGGAGCCAATGCAGGTGAAGTGACGGCGGTAGTGGCCAACTCACCCGGTGCGTTGGAGCTGGCCCCCTCTGCGGAATACCGGGGAGGGC GTCCCTGGCTGTTCCTTTGCGACGCGCAGGGACAGATCATGAAGGACATCAATGGGAAGCCTCGTGCTTATCCTCAGCACGGTGATCCTTATGAGGAGAT CTATAAGAGTTCAGCCTGGTATGGGTTGGTGCCGGAGCAGAATGTTAAGTATTTGGATATGTCGGAAATCGTTAAGAGAAAAATCCCACGGGAGGAGTTT GATCAGCGAATAGACGACGTTTTCACCTTTCACAGTGATCTAGCAGCGGCAGGCTACCACCCCGAAACCTACGCTCACTATGGGGCTGACGACTCCTCTG ACAGGCACAGTTGGCGGGACATGATCTGGCAAGGCGATTCAACTTCCTTGGAGTCATCAGGTTCTACCGTCAAGGACAATGAGAACGGTAGTTACAACGG CTGGTTTCGCCGAGGTCTGCCTTCGGTTGTTGAGGGGCCTCTACGATCTGCAATGTCCCAAGAGTCATTTGGCAGCGGCGGGGACGGAACCGTACCGACC GACTCCGGCCTGGCCCCTGGCAAAGCCGGCATCAAGGCCAGCTTCCGCCAGGGCAGCAAGGGCGTCGGGCAGTACAACACCGACAAAGGCTACGAACATC AAAAAAGCTACAACGACAAGCGTGCCCAATGGGCCACGTTCTATGGCGTTATCAAAATTGCCCAGAATGCTGACTGGGCAGGAGGTTCATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TGCGCCTGCGCCAGTTCTTCACTGTTCTTGGCATGGTCGCCTTGATCAGTATCACCAGTTGCACATCATTCTCCTCTTCTCGGAACTCTTCCATGGACAA GACCGGATGGATCACTCATTGCTTTGGCAGATTTCTGATCGACTTGCCGCCCCAGGCGGAAATTAGAGCGGGGTATTACCTCTGGGGCGATAACATCGAG GCGCTCGACGAAACACCGGTCACTCTGGCTGCCAGAATTAGTCAGCGTGAGCAGGAACTGAAGGCTCAACCGCATAGAAGGCAACAAGGTAGCCTGTTTC TTCGCCGACTAGACCTTGGGGGGAACTCGACAGGGCTGCTTTCCTGGAAATCCAATGCCAGTACAGCGATGTATCTATTGGATGCTTACGCTGTTTCCAA ACCGACGTGGCGTGCTTACCGTTGGATGGGAGGTGTATCGAAAAGTCTTGAATCACAGGGTATTGAAAGTGCCACTTCTCTGGCCCACAGCCTACGTTCC
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| Amino Acid Sequence |
>membrane protein
MSSEANTQEVIVPRARDNLGRPIYTSQLTRTEDQRDKVLLVKQQVTIPVIFIPGIMGTNLRNKKTLNSVWSPPNASFSLGDIAGVLGALFVWGFRGPKRR QELLKPDDVEVDDRGSVDPGASGLSEEAARMRGWGKVMRTSYNPIMALLESRLDHIVKQRELQGWWQAESLRSPSDYGEELGSAAPLSSEELTAAGKYQF DIWCGGYNWLQSNRQSGQDVRDYIENTVLPFYREKGGVDPEQLARTKVILVTHSMGGLVARSLTQLHGYERVLGVVHGVLPALGSSAIYHHVRCGYEGAP QIVLGANAGEVTAVVANSPGALELAPSAEYRGGRPWLFLCDAQGQIMKDINGKPRAYPQHGDPYEEIYKSSAWYGLVPEQNVKYLDMSEIVKRKIPREEF DQRIDDVFTFHSDLAAAGYHPETYAHYGADDSSDRHSWRDMIWQGDSTSLESSGSTVKDNENGSYNGWFRRGLPSVVEGPLRSAMSQESFGSGGDGTVPT DSGLAPGKAGIKASFRQGSKGVGQYNTDKGYEHQKSYNDKRAQWATFYGVIKIAQNADWAGGS
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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