Pseudomonas chlororaphis PA23, EY04_RS17860

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas chlororaphis strain PA23, complete genome. [Details]
DNA Sequence Upstream of Gene
GTACCCAGTCGTTCTCGGGGTTGCGACCGATTTTCAGCTCACCGCGATCAAGCTCGAACTCCGCCCGTTGGCCGGGAGTCAGCTTGTGATAACTGGTGAT TGTCAAACGCAGCGGCATTAGAACTCCTTGTACGGTATTGCTCAATAACAACAGCTCGGGCATGCCAGCGAGTGCAAAGCGAGTATAGCCCCCTAAAAGA TTTCCGCGCCCTCAAAGTTCCTGCGCTTATATTCGCTTTTTTCAAATAAGCCCTATAACAAAAGAAACTAAAAGAACCACCACCCACCACCTATCTTCAA ACATCACAAGGTTCCCCCCATTGGTCGGAGAGTTTCTTGACAACAATTGAACTGGGCTAAAACTTCAGTTCAATTATTGAATCCAGAAATGACCAAAAAG TGGGTCTGGATAGAACACGCATCTGCAGGAAAGGGATTTTGTCGTGCGCTCGCCCTGACCGGGCGCCGATTGCCGGGCCGATATGGAGATCACGTCCGTG
DNA Sequence for Gene
>EY04_RS17860
ATGGATGTACAGCGTTTGTTGGAAACCATTTCCCCTGACTCCCCCTGTGGCGGCGACCTCGAGTACGACGCCGCCTTTCTCGAGCTTGAACGCGCGGCGC AAGGCCAACCCGAACGGCAGATGGGCGATGCCGTGCTACCCGCCACACCGCCGGAATGGCGCCAGGTCCGCGACCTCTGCGTCGAGCTGTTCACGCGCAG CAAAGACCTGCGCATCGCCAACTACTTCCTGCAAAGCGCCATTGCCCTGCAAGGCCTGCCCGGCCTGGTGCAAGGGTTACAGCTGATCCAGCAGTTGCTC GCGCAGTATTGGGACGACCTGCATCCCAAGCTGGATGCAGAAGATGGCAATGACCCCACTTTCCGGATCAACGCCCTCGCCGGCCTCAACGCCGAGCCGG TCATTCGCCTGCTCTGGGGCATGCCGCTGATCAGCTCGCGGGCCTTTGGCAACGTCGGCCTGCGGGCCGCGCTGAATGCCGCCGGCTTGCAGCGCTTCGC CAGTGAAAGCCTCAGCCCGGACCAGCTCGGCGCGGCCTTTCAGGACTGCGCGGGCGAACAGCTCGAGGCTTGCCGCGCCGCCCTGAACGAGGCCCATGGC ACGCTGTTGACCATAGAGCGCGAGGTCAACGAACGGGTCGGTTCCAACCACGGCGCGGACCTGGGCACGATCAAGCAACTGCTTCGGCATGCCGTGCAAA TCATCGCCGAGCACGCCCCTCAGCCGGGCGTTTCCAGCGCTGTCGCGCAAGCCGGCGAGCCTGTCGATGCAGCCACGTCCACGGCCCCCAGCGCCGCCGC GCCGCGCATCGCGGGCGAGATCGGCAACCGTGACGATGTGCTGCGCAGCCTCGACCGGATCCTCGGTTACTACGTCAGGCACGAGCCCTCAAGCCCGGTG CCCGTGCTCTTGAGCCGCGCCAAGAGCCTGGTCAGCGCGGATTTCGCCACCATCGTGAGCAACCTGATTCCGGACGGTTTTTCCCAGTTCGAAAAATTGC GCGGGCCCGAAGGTGAACAGTCCGAGTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
AAACGCTTAACCGACGCCCATCCAACACAGCCGCCTAGGCAGCGCAGGAGGAAAAATGGCTAACACCAGCAGCCAGAAATTCATCGCCCGTAACCGTGCT CCCCGGGTGCAGATCGAGTACGACGTGGAGCTTTACGGTGCGGAGAAGAAGGTGCAATTGCCCTTCGTCATGGGGGTGATGGCCGACCTTGTCGGCAAGC CCGCCGAACCGCTGCCGGCGGTGGCCGACCGCAAGTTCCTGGAGATCGACGTCGACAACTTCGACTCGCGGCTCAAGGCGATGAAACCGCGGGTGGCGTT CAACGTGCCCAATGCCCTGACCGGCGAAGGCAACCTGAGCCTGGACATCACGTTCGAGAGCATGGACGACTTCAGCCCGGCCGCGGTGGCGCGCAAGGTC GATGCCCTCAACCAACTGCTCGAAGCCCGCACCCAGCTGGCCAATCTGCTGACCTACATGGACGGCAAGACCGGTGCCGAGGACATGATCATGAAGGCGA
Amino Acid Sequence
>type VI secretion protein ImpA
MDVQRLLETISPDSPCGGDLEYDAAFLELERAAQGQPERQMGDAVLPATPPEWRQVRDLCVELFTRSKDLRIANYFLQSAIALQGLPGLVQGLQLIQQLL AQYWDDLHPKLDAEDGNDPTFRINALAGLNAEPVIRLLWGMPLISSRAFGNVGLRAALNAAGLQRFASESLSPDQLGAAFQDCAGEQLEACRAALNEAHG TLLTIEREVNERVGSNHGADLGTIKQLLRHAVQIIAEHAPQPGVSSAVAQAGEPVDAATSTAPSAAAPRIAGEIGNRDDVLRSLDRILGYYVRHEPSSPV PVLLSRAKSLVSADFATIVSNLIPDGFSQFEKLRGPEGEQSE
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site