Pseudomonas chlororaphis PA23, EY04_RS17850

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas chlororaphis strain PA23, complete genome. [Details]
DNA Sequence Upstream of Gene
AACAACCCCCTCAAATTCGCCCCCAATGTCGATGAGGCGCTGCTGTTATTGCTGCGTTCCGGCAACCAGGCCTTCATGCCGGCCGACCAGGCGATCAAGG AAAGCTTCGACGACCTGAAAGCGCATCAACTGGCCGTCATGGCGGGCGTACAAGCCTCGATCAAACACCTGCTCCAGCGTTTTCAGCCCGCGGTACTGGA AGCGCGTTTAAGTCAACCTTCGGCTATTGGCGCTTTGCTGCCCGGTAGGCGTCAAGCGCAATACTGGGAGTTGTTCACGGAACTCTATGCGAGCATTTCC AGGGAGGCCGAAGACGATTTCGAGGATTTGTTCGGGCGTGAATTCAGTCGAGCCTATGAAGAACAAAATACCAAGTTGCGAAAAGGCTGAGTGCCATCGG TTAGTTGGATAAAGGCTAATGGCTATTAAATAGTGAGTCGATCTTGTTTGGCTATCGGTAGTTTCGATTTGGAATAATAAATGTCAGTGAGGACGACGAC
DNA Sequence for Gene
>EY04_RS17850
ATGCCAAAGTTCTTGTTGTTCGCAACAGTACTGCTGCTGACTGCCTGTAGTTCGAGTCCGCCGCCGCCCCCTACGCCTACTGTCGTTGTCATGCATATCC AGGCCGCTGCCGATCTGAATCTTTCGGCGGGCGGCCAGGCGACGCCGGTGCGGGTGCGTTTGTATGAGTTGAAAAACGGCGGAGCCTTCAGTCGCGCCGA CTATTTCTCCCTGGTGAATGCCACCGGCGCGACCTTGTCCGCGGACCTGGTGGCGCAGGACGAATTGCTCATCCAGCCGGGTCAACGGCTGACCCTGGAG CGCACGCTCGACGAGCAGAGCCGTTTGCTCGGCCTGGTGGTGTCCTACCGTGAACTGGACAGCGCCGTGTGGCGCCAGATGGTTAGTATCCCGAGCAATG AAACCACGCCATTGACGGTTTCCCTGACAGCCAGGGCGATCAGCGCGGCAGCCACGAAACCTGCGAATTAG
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
TCCTGTCGAGGAAGCCAGCCCATGTCCTGGAATAACCGTGTGGTGTGGTCCGAAGGAATGTTTCTGCGGCCGCAGCATCTCCAGCAGCATGATCGCTACA TGGAAGCCCTGATCGATGGCCGTTGCCGCCCGTTGAGCGCGGGGGGCTGGGGGTTCTCCGAACTGCGCATCGACGAGTCCCTGCTCAGCCAGGGCAAGGT GGCGATTGTCAGCGCGCGCGGGGTGCTACCCGATGGCACGCCTTTCGACATTCCCGGCGACGATCTGCCGCCGCCGCCACTGAACGTGAACGACAACCTG CGCGATGCGCAGGTCTTCCTGGGCTTGCCGCTCAAGCGTGCCGGCAGCCGCGACACCGTGGGGGAGGGCGAGGCACCGGGCGGTGCGCGCTATATCAGCC AGGTGCGGGAAGTGCGCGATGACAACGCCGCCTTCGAGAGCCGCGCGTCGCTGGCGATCGGCGGCAAAGCCTTGCGCCTGCTGACCGAGCGCGACGGCCT
Amino Acid Sequence
>type VI secretion protein
MPKFLLFATVLLLTACSSSPPPPPTPTVVVMHIQAAADLNLSAGGQATPVRVRLYELKNGGAFSRADYFSLVNATGATLSADLVAQDELLIQPGQRLTLE RTLDEQSRLLGLVVSYRELDSAVWRQMVSIPSNETTPLTVSLTARAISAAATKPAN
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site