Pseudomonas chlororaphis PA23, EY04_RS16095
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis strain PA23, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GCGTTCCTGGTACTGGCCGCGCAATACGAGAGCTGGAGCCTGCCGCTGGCGGTGATCCTGATCGTACCGATGACCCTGCTGTCGGCCATCGCCGGGGTGA TCCTGTCCGGTGGCGACAACAACATCTTCACCCAAATCGGCCTGATCGTACTGGTGGGCCTGGCGTGTAAGAACGCGATCCTGATCGTCGAGTTCGCCAA GGACAAACAGGAAGAAGGCCTCGACCCGCTGGCCGCGGTGCTGGAAGCCTGCCGCCTGCGTCTGCGGCCGATCCTGATGACCTCGTTCGCCTTCATCATG GGTGTGGTGCCCCTGGTGTTCTCCAGCGGTGCGGGTGCGGAAATGCGTCACGCCATGGGTGTCGCGGTGTTCTCCGGGATGCTCGGGGTGACCTTCTTCG GCCTGCTGCTGACCCCGGTGTTCTACGTCCTGATCCGCAACTATGTGGAGCGCAGCGAAGCCCGCAAAGCGACCCGTGCCCTGAAACTGGAGGCGCAACA
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| DNA Sequence for Gene |
>EY04_RS16095
ATGAGCCTGAAAGTCTTCCTGCCGAGCTTGCTGGTACTGGCCCTGAGTGCCTGTGCCGTCGGCCCGGACTATCAGACCCCGACAACCGAGGCGGCCAACA TCACGGCCGCCACCGACGGCGCCGCGGGCCAGAAGAATTTCGACCGCGCGCGTTTCGAAGGCATCTGGTGGCAGCAGTTCGACGACCCGGTGCTCAACCA GCTGGTGACCCGGTCCCTGCAGGGCAACCGTGAGTTGCGCGTGGCCTTTGCCCGCCTGCGGGCCGCCCGGGCGATTCGCGACGACGCCAGCAACGATGCG ATGCCGACCATCACCAGCCGCGCCAGCAGCGACCTGGCCAAGGGTCAGATCCCCGGCCAGACCACCCGCCGGGTCAACAGCGAACGCTACGACCTGGGCC TGGACATGGCCTGGGAACTGGACCTGTTCGGCCGCATCCAGCGCAACCTGGAAGCCAGCGAAGCCGACCAGCAGGCCGCCGAGGCCGACCTCTACCAGCT GCAAGTCACCATGATTGCCGAGCTGGTGGATGCCTACGGCCAGCTGCGCGGCGCCCAGCTGCGGGAAAAGATCGCCCTGGCCAACCTGAGCAACCAGCAG GAGTCGCGCAAGATCACCGAAAGCCTGCGTGACGCCGGCGTCGGCGATCAGCTCGACGTGGTCCGCGCCGATGCGCGCCTGGCCGCGGTGGAAGCCAGCG TGCCGCAACTGCAGGCCGAACAGGTGCGCCAGCGCAACCGTATCGCCACCCTGCTCGGCGAGCGTCCGGACAAGCTCAGCGTCGATCTTGCGCCCGCGCA GCTGCCGGCGATTGCCAAGGCCCTGCCGATCGGCGACCCGGGCGAGCTGCTGCAACGCCGTCCGGACATTCTCAGCGCCGAACGCCAGTTGGCCGCCGCC ACCGCGCGGATCGGCGTGGCCAAGGCCGACCTGTTCCCCCGGGTCAGCCTCAGTGGTTTCCTCGGCTTCACCGCCGGCCGTGGTTCGCAGATCGGCTCCT CGGCCGCCAATGCCTGGGCCCTGGGCCCGAGCATCACCTGGGCCGCCTTCGACCTGGGGAGCGTGCGCGCCCGTCTGCGCGGCGCCAATGCCGACGCCGA CGGCGCCCTGGCGACCTACGAGCAGCAAGTGCTGCTGGCCCTGGAAGAGTCGGAAAACGCTTTCAGCGATTACGGCAAGCGCCAGCAACGGCTGATCTCG CTGATTCGCCAGAGCGAGTCGAGCCGCGCCGCGGCCGACCTGGCGGAAATCCGCTACCGCGAAGGCACCGTCGATTTCCTGGTGCTGCTCGACGCCCAGC GCGAACGCCTGGCCGCCGAAGACTCCCAGGCCCAGGCCGAGGTCGACCTGTACCGTGGCATCGTCGCCATCTACAAGGCCCTGGGTGGCGGCTGGCAGCC TGAGACGGTCGCCAGCAAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGCTTCAACCGAGCTCCTTTGGTTGGCCGCAACCAACCAAATTTTTGCCCCGTGTTCTCATTCGGTCACGGGGCTTTTTTTGCCTCAAAAAAAGCATCGC GGGCAAGCCTCGCTCCTACGGGACCGCATGAATCTGTAGGAGCGAGCGGGCGGCGATCCGACTTGCCCGCGATAACAATCGTTCAGACAACCCAACCCTG TGCCTATTCCAACACCGTCACCGTCGCCGTGGTCCCGGCGCGCAACCTGTCCTTGCCCGGGTAATCGGGGTCGATGGCGATCCGCACCGGTACCCGCTGC GCCAGCTTGACCCAGGTATAGCTGGGGTTGATGTTGGCCAGCAGGCGGCTGCCCTGGGAGTTCTCGCGGTCGGTAATGGCGAAGGCGATGCTCTGCACCT TGCCGCCGAAGGTCTCGCCGCTCATCAGCTGGATGCGCACCGCACTGCCCTCCTCGATCCGCGGCAGCTTGGTCTCCTCGAAGTAACCACTGATATAGAA
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| Amino Acid Sequence |
>RND transporter
MSLKVFLPSLLVLALSACAVGPDYQTPTTEAANITAATDGAAGQKNFDRARFEGIWWQQFDDPVLNQLVTRSLQGNRELRVAFARLRAARAIRDDASNDA MPTITSRASSDLAKGQIPGQTTRRVNSERYDLGLDMAWELDLFGRIQRNLEASEADQQAAEADLYQLQVTMIAELVDAYGQLRGAQLREKIALANLSNQQ ESRKITESLRDAGVGDQLDVVRADARLAAVEASVPQLQAEQVRQRNRIATLLGERPDKLSVDLAPAQLPAIAKALPIGDPGELLQRRPDILSAERQLAAA TARIGVAKADLFPRVSLSGFLGFTAGRGSQIGSSAANAWALGPSITWAAFDLGSVRARLRGANADADGALATYEQQVLLALEESENAFSDYGKRQQRLIS LIRQSESSRAAADLAEIRYREGTVDFLVLLDAQRERLAAEDSQAQAEVDLYRGIVAIYKALGGGWQPETVASK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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