Pseudomonas mandelii JR-1, OU5_RS31785
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas mandelii JR-1 plasmid, complete sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCCGCCAATTGAGCCCGTTCACCCACCTCGCGGTCATGGAAGGCGCCGTCAAAGTGGTGCTGGCCGATAACCGTCAGGCCGAGTCCCTGATCGTCAATGC CGGCCAGCGCATGGCATTCACCGCCCAAGCCTTTGGCAGGGTGAACACCGCAGACCGGAATGCCAGCGCCTGGACCCAGGGCATGCTGATGGCGGACAAG ATGCGCCTGGCGGATTTCGTCGCTGAGCTCACCCGCTATCGCCACGGTTTTGTCAGGTACGACCCGGCGCTTGCCGATCTGCGCATTTCCGGCGCGTTTC CGATCAGCGACACCCAGCGCACCTTGAACATGCTGGTGCAAACCTACCCGGTCACCGCCACCGCTCACCTGCGAGGGTACTGGGTCACTTTGTCCCCGGC CTGAGCCTCCAAAAAAATCTGCCGCTGGCTGATACTTTTTTCGATCTCGGCTGGCCTGTACAGAAACCTCCATTGCCTCTCGCCACAGGGTCATCCATCC
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| DNA Sequence for Gene |
>OU5_RS31785
ATGCCTGTCATTTGCCGCGCGCTGCTGAGCCTGACCCTGATCAGCGCTGCCTGCCCGTCGGCGATGGCAGCCGCGCCGACGCAACTCGATTCGGTCGTGG TCCATGCCTACAACATCGCCCCCGGACCTCTCGGCGCAACGCTGTCGAGCTTCGCCGTGGACGCCGGCATCGCCCTGTCGTTCGAACCTTCGCTCACGGA GGGCCTGATCAGTCCGGGGCTGACCGGCTCTTGCTCGACGCGCGAAGCAGTGACCCGGTTACTCGCCGGCAGCGGTCTGGACATGGTCTTGCGCAGCGAC GGCAGCTACACGCTGGTGGAACGCCGGGTCACCCTCGACGAAACCACCATCGACGGCATCGACACACGCAGTGACAGCCTGCCGCCGGTGTATCCAGGCG GTCAGGTGGCGACCGGCAGCCGTCTGGGCATGCTCGGCAACACCGACGTGATGGATGCGCCGTTCAGTGTCAGCACCTACACCGCCGCCCTGATCAAGGA CCAACAGGCAACGACCGTGGGTGATGTGCTGGGGCGTGACTCATCGGTGCGCTCCACCGGCCAGACCGGTGGCATCGTCGACTCGTTCTTCATCCGGGGG TTTCCCGTCGGTGAAGGCAATCTGGGCGAACTGGCCTTCGACGGCGTCTATGGCGTGGCCTCCAACTACCGGGTGTTCACCGAATACGCCGAACGCATCG AAGTGGTCAAGGGGCCCGGCGCGCTGCTCTACGGCATGTCGCCCAACAGTGCCGTGGGCGGCGTGATCAACGTGGTGCCCAAGCGTTCTCTCGATGAAGA CCTGACCCGATTCACCGCCAGTTACGCCCAGGACGCCCAACTCGGCGGTCACCTGGACCTCAGCCGACGTTTTGGCGAGGAACGTCGCTTCGGTGTGCGC CTCAACGGCAGCGTGCAGCAAGGTGACACGGTGATCGATGATCAGAACCGCGAGGTCGGCGTCGGCGCGCTGGCCCTGGATTATCAAGGGGATCGCCTGC GCACCAGCCTGGACCTGGTGAGCCAGGAAGAGCAGTTTGACGCCGCGTCCCGACCGTTCCTGATCGCGTCGGGCGTGCAAATCCCTTCCGCCGCCAACGG CCGGACCAACGTCAGCCAGGACTGGGGCTGGTCCAGGACCCGCGACAAGTCGGCCCTGCTCAGCGGTGAATACGACCTCAACGATCAATTGACGGTGTTC GCCCATGCCGGCGGCGGCCAGTCGAAGGTCGCGCGCATGTCCGACCAGACCCCCACCATCATCAACGCCGCAGGCGATACCTCGTCGATCCCCGGTTATT ACAAGTTCGAAGTCCGGCGCTACACGGTCGACGCCGGTGCGCGGCTGCGCTTCGACACCGGTCCCGTGAGCCACAGCACCGCCCTGCAAGTGACGCGTTA TCGCGATGAGTTATCCCGGGGCATTTTGTCCGGGCCTGCGGTGCTGTCGAACATTTACCACCCGATCCATCGCCCCAAACCCGCGATCGCCGAGCCGGCC ACGCCCAAAGTGTCGGCGACCGAGTTGTCCGGCATCGCCTTGGCCGACACCCTGTCGATACTCGACCAGCGCGTGCAAGTGACCCTGGGCCTGCGCAAGC AGAACATCCAGTCCCACAACTACAACGCCGCCGGTGCGGTCACTTCAGCCTATGACGATGGCAAGACCACGCCGTTGTTCGGGGCCGTGCTGCGACCCTG GGACCACGTGTCGTTCTACTACAACTACATCGAGGGCCTTAGCAAGGGGGACGTCGCCCCCAGCAACGCCTCGAACGCAGGCGAAATCTTTGCCCCCTAC GTGTCGCGCCAGCAGGAGGTCGGGGTCAAGCTCGACTACGGCAGTTTCATGTCGAGCCTGGCGCTGTTCCAGATCAAGAAGCCCAGTGGCGAGTTGTCTT CCGGGGTGTTCGCCGTCCAGGGTGAACAGCGCAATCGCGGCGTGGAACTGAACATGTCGGGCGAGATAGCCCAAGGCACGCGCCTGCTCGGTGGCGTCAC GCTGTTGGACGGGGAACTGACCAAGACCAGCGTCGCGGCCAATCGCGGCAACACTCCGGTGGGCGTGCCCGACGTGCAAGCCAACCTCTGGGCCGAATGG GACACACCCTGGACCGAAGGGCTGACGCTCACCAGCGGCGCGATCTACACCGCCAGCCAGTACGTCAACCAGGCCAACACCCAGGAACTGGACCCGTGGA CGCGCATCGATGTCGGCGCTCGATACACCACGCGTATTGCCCAGCGACCCACGACGTTTCGCGCCACGGTGCAAAACGTTTTCGACCGTGAGTATTGGTC GGGGGTCGCCTCCTACGGCGCGTTTTCCCAGGGGTCACCACGCACCCTGCTCCTGTCGGCCACGGTCGATTTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CACATGCAAAGGCCTTGATCATGCTCACCATTGTTCGACGCAGCCACGCCCTGGCCGCGCTGCTGTTTGCTGGATTGCTGGGGGTTTCACTGGCGTCATT GGCCAACGAAACGGATGACACGCGCAGCACCGTCACCGATCTGCTGGGGCGCAAGGTCAAGGTCAACCTGCCCGTCAAACGGGTGATTCTCGGCGAGGGC CGCCAGTTGTACCTGGTGGCGGCGCTGGACACACAAAACCCCATCGAGCGTATCGTCGGCTGGCGCAAGGACCTCATCCAGTCCGATCCCGACACTTACA ACGCCTACCTGCGCAAGTTTCCGGGCATTGCCGACATCCCTACGTTCGGCGGGTTCGAAGACGGCACCTTCGACATCGAGCAAGCGATCTCGCAGCGTCC CGATGTGATTGTCCTCAACATCGAGGCCCGGCACGCCACCGAAGATGCGCGCTACATCGAGAAGCTCGACGCCTTGGGCATTCCCGTGGTGTACGTCGAC
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| Amino Acid Sequence |
>TonB-dependent receptor
MPVICRALLSLTLISAACPSAMAAAPTQLDSVVVHAYNIAPGPLGATLSSFAVDAGIALSFEPSLTEGLISPGLTGSCSTREAVTRLLAGSGLDMVLRSD GSYTLVERRVTLDETTIDGIDTRSDSLPPVYPGGQVATGSRLGMLGNTDVMDAPFSVSTYTAALIKDQQATTVGDVLGRDSSVRSTGQTGGIVDSFFIRG FPVGEGNLGELAFDGVYGVASNYRVFTEYAERIEVVKGPGALLYGMSPNSAVGGVINVVPKRSLDEDLTRFTASYAQDAQLGGHLDLSRRFGEERRFGVR LNGSVQQGDTVIDDQNREVGVGALALDYQGDRLRTSLDLVSQEEQFDAASRPFLIASGVQIPSAANGRTNVSQDWGWSRTRDKSALLSGEYDLNDQLTVF AHAGGGQSKVARMSDQTPTIINAAGDTSSIPGYYKFEVRRYTVDAGARLRFDTGPVSHSTALQVTRYRDELSRGILSGPAVLSNIYHPIHRPKPAIAEPA TPKVSATELSGIALADTLSILDQRVQVTLGLRKQNIQSHNYNAAGAVTSAYDDGKTTPLFGAVLRPWDHVSFYYNYIEGLSKGDVAPSNASNAGEIFAPY VSRQQEVGVKLDYGSFMSSLALFQIKKPSGELSSGVFAVQGEQRNRGVELNMSGEIAQGTRLLGGVTLLDGELTKTSVAANRGNTPVGVPDVQANLWAEW DTPWTEGLTLTSGAIYTASQYVNQANTQELDPWTRIDVGARYTTRIAQRPTTFRATVQNVFDREYWSGVASYGAFSQGSPRTLLLSATVDF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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