Pseudomonas mandelii JR-1, OU5_RS29415
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas mandelii JR-1, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CCTCCTACGTCGGTGAGAACAAACTGTTCGAAGACCAACTGCTCAAAGGCGAAATCGAAGTCGTCCTGACCCCGCAAGGCACCCTCGCCGAAAAAATGCG CGCTGGCGGTGCCGGCATCCCCGCTTTCTTCACCGCCACCGGCGTTGGTACTCCGGTTGCCGATGGCAAGGAAGTGCGCGAATTCCATGGCCGCAAGTAC CTGATGGAAGAATCCATCACCGGTGACTTCGCCATCGTCAAAGGCTGGAAAGCCGACCACTTCGGCAACGTGATCTATCGCCACACCGCCCAGAACTTCA ACCCGCTGGCCGCCACTGCCGGCAAGATCACCGTGGTCGAAGTCGAAGAAATCGTCGAACCCGGCGAGCTGGAACCGTCGCAGATCCACACCCCTGGCAT CTACGTCGACCGAGTCATTTGCGGCACGTTCGAGAAGCGCATCGAACAGCGCACCGTGCGTAAGTGATCCCCAGCCCCCGGACCTGAAGGAAAAATAACA
|
|
| DNA Sequence for Gene |
>OU5_RS29415
ATGGCACTTTCCCGCGAACAAATGGCTCAACGCGTCGCCCGCGAAATGCAGGACGGCTTTTACGTGAACCTGGGCATCGGCATTCCGACCCTCGTTGCCA ACTACATCCCTGAAGGCATGGAAGTCATGCTGCAGTCGGAAAACGGCCTGCTCGGCATGGGCCCCTTTCCTACTGAAGAAACCATCGATGCCGACATGAT CAACGCCGGCAAACAAACGGTGACCGCGCGTATCGGCGCGTCGATCTTCTCATCGGCCGAGTCCTTCGCGATGATTCGCGGGGGTCATGTCGACCTGACC GTGCTGGGCGCCTTTGAAGTCGACGTGCAAGGCAACATCGCCTCGTGGATGATCCCCGGCAAACTGGTCAAGGGCATGGGCGGCGCCATGGACCTGGTGG CCGGCGCGGACAACATCATCGTCATCATGACCCACGCGTCCAAGGACGGTGAGTCCAAGCTTCTGTCCAAATGCAGCCTGCCGCTGACCGGCGCCGGGTG CATCAAGCGTGTGCTGACCGACCTGGCTTACCTTGAAATCGAAAATGGCGCGTTCATTCTCAAAGAACGTGCGCCGGGCGTCAGCGTCGAAGAGATTGTC GCCAAGACCGCCGGTAAACTGATCGTGCCGGATCACGTTCCGGAAATGCAGTTCGCTGCCCAGTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GGAATTCTTCCATGCAAGACGTCGTTATTGTTGCCGCCACCCGAACCGCCATCGGCAGTTTCCAGGGCTCGCTGGCCAATGTGTCCGCCGTTGACCTCGG TGCCGCGGTGATCCGTCAGCTGCTGGCGCAAACCGGCCTGGACGTTGCTGAAGTCGATGAAGTGATCATGGGCCAGGTGTTGACCGCCGGTGCCGGGCAG AACCCGGCGCGCCAGTCCGCGATCAAGGCCGGCCTGCCGTTTACCGTGCCGGCGATGACCCTGAACAAGGTCTGCGGCTCGGGTTTGAAAGCCTTGCACC TGGCCACTCAGGCGATCCGCTGCGGCGACGCCGAGGTGATCATTGCCGGCGGCCAGGAAAACATGAGCCTGTCCAACTACGTCATGCCCGGAGCCCGCAC TGGCCTGCGCATGGGTCACGCGCAAATCGTCGACACCATGATCAGCGACGGCCTGTGGGATGCGTTCAACGATTACCACATGGGCATTACCGCCGAGAAC
|
|
| Amino Acid Sequence |
>succinyl-CoA:3-ketoacid-CoA transferase
MALSREQMAQRVAREMQDGFYVNLGIGIPTLVANYIPEGMEVMLQSENGLLGMGPFPTEETIDADMINAGKQTVTARIGASIFSSAESFAMIRGGHVDLT VLGAFEVDVQGNIASWMIPGKLVKGMGGAMDLVAGADNIIVIMTHASKDGESKLLSKCSLPLTGAGCIKRVLTDLAYLEIENGAFILKERAPGVSVEEIV AKTAGKLIVPDHVPEMQFAAQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|