Pseudomonas mandelii JR-1, OU5_RS25675

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00158
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016887 ATPase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00382
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0000160 phosphorelay signal transduction system
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00072
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0043565 sequence-specific DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR01590
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00158
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008134 transcription factor binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00158
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pman02020 Two-component system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF00158 Sigma-54 interaction domain IPR002078 RNA polymerase sigma factor 54 interaction domain 135 296 1.6E-67
PANTHER PTHR32071 TRANSCRIPTIONAL REGULATORY PROTEIN - - 1 445 1.8E-130
Gene3D G3DSA:1.10.8.60 - - - 302 374 1.1E-21
SUPERFAMILY SSF46689 Homeodomain-like IPR009057 Homeobox-like domain superfamily 343 444 1.43E-10
Pfam PF02954 Bacterial regulatory protein, Fis family IPR002197 DNA binding HTH domain, Fis-type 405 444 1.5E-13
SMART SM00382 AAA_5 IPR003593 AAA+ ATPase domain 150 293 9.0E-13
Pfam PF00072 Response regulator receiver domain IPR001789 Signal transduction response regulator, receiver domain 5 114 7.8E-27
PRINTS PR01590 FIS bacterial regulatory protein HTH signature IPR002197 DNA binding HTH domain, Fis-type 411 428 2.5E-6
FunFam G3DSA:3.40.50.300:FF:000006 DNA-binding transcriptional regulator NtrC - - 125 300 5.0E-75
SUPERFAMILY SSF52172 CheY-like IPR011006 CheY-like superfamily 3 175 5.27E-42
PRINTS PR01590 FIS bacterial regulatory protein HTH signature IPR002197 DNA binding HTH domain, Fis-type 428 448 2.5E-6
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 133 371 4.03E-69
Gene3D G3DSA:1.10.10.60 - - - 387 448 4.3E-10
SMART SM00448 REC_2 IPR001789 Signal transduction response regulator, receiver domain 3 114 1.3E-35
CDD cd00090 HTH_ARSR IPR011991 ArsR-like helix-turn-helix domain 400 449 3.21745E-4
CDD cd00009 AAA - - 131 292 1.36912E-23
FunFam G3DSA:3.40.50.2300:FF:000018 DNA-binding transcriptional regulator NtrC - - 1 127 2.9E-40
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 126 301 8.1E-64
Gene3D G3DSA:3.40.50.2300 - - - 3 125 3.0E-33

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.