Pseudomonas mandelii JR-1, OU5_RS23975
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas mandelii JR-1, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CGGAGCGAAGGTACGCCGAGCCTTAGCGAGGGGCCGGACGCTTGGGGCGAGACTTTTTGGTTCCTTTTGTGGCGTTTGACAAAAGGGACTCGCCGTAAGG GCGAAACCATAAGTGGCCGTTACCGCACAAATGGATATGTACACCAGCGGGAGACTGGTCGGCTGTCAGGCCGTCATTGCGAGCAGGCTCACTCCCACAG TTGAAATGCGGACACCCGCAGAACCCAAGCCAATCTCCGACAATGAAACCAGCATTCAGCCCCTTGCCCCCCCGCCACAGCAGGCTAACATCAACAAAAG GAAAAATAGTCCCAATCCCCCTCAAGTTGAAGGACCCAACTACCGACACAGTACTAATAGGGCAAATACTCAAAACAACAGCATTTCTGCCAAGCTGCAG GCAAAAAACCATGAGATTGAATGTCCCTTTGACTGCCATCACGGGATTGCCAATACTCATGGCAACTTGATGCTACCCGCACGGAACAAGGAATAACCCT
|
|
| DNA Sequence for Gene |
>OU5_RS23975
TTGAAGCTGGAACTCAAGAACAGCTTGTCGGTGAAGTTGCTCCGGGTCGTGCTCCTGTCGGCATTGATCGTCGGCGTAGTCTTGAGCTGCGCGCAGATCG TTTTCGATGCCTATAAAACACGCCAGGCCGTGGCCAACGATGCACAACGCATCCTCGACATGTTCCGCGACCCCTCCACCCAGGCCGTCTACAGCCTGGA TCGGGAAATGGGCATGCAGGTCATCGAAGGCCTGTTCCAGGACGAAGCCGTGCGCCAGGCCTCCATCGGCCATCCCAACGAAGCCATGCTCGCGCAAAAA TCTCGTGAGTTGCACCATTCAAACAGCCGCTGGCTGACCGATCTCATTCTTGGCAAGGAACGCACCTTCACCACCCAACTGGTCGGCCGCGGCCCCTACA GCGAGTATTACGGCGATCTGAGCATCACCCTCGACACCGCCACCTACGGGCAGGGTTTCATCGTCAACTCGGTGATCATCTTCATTTCCGGCGTATTGCG CGCCCTCGCCATGGGCCTGGTGTTGTACCTGGTCTACCACTGGCTGCTGACCAAACCTCTGTCGCGCATCATCGAACACCTGACCGAAATCAATCCGGAC CGCCCCAGCGAACACAAGATCCCACTGCTCAAGGGTCACGAAAAGAACGAACTGGGGATCTGGATCAACACCGCCAACCAGTTGCTCGAATCCATCGAAC GCAACACCCACCTGCGCCACGAAGCGGAAAACAGCCTGCTGCGCATGGCCCAGTACGACTTCCTAACCGGTCTGCCGAACCGTCAGCAATTGCAGCAACA ACTGGACAAGATCCTGGTTGACGCCGGCAAGTTGCAACGCCGGGTTGCGGTGCTGGTGGTGGGCCTGGACGACTTCAAAGGCATCAACGAACAGTTCAGC TATCAGACCGGCGACCAATTGCTGCTGGCCCTGGCCGATCGTCTGCGCGCTCACAGCGGTCGCCTCGGCGCCCTCGCTCGTCTCGGTGGTGACCAGTTCG CCCTGGTCCAGGCCGATATCGAACAACCTTACGAAGCCGCCGAACTGGCGCAAAGCATTCTCGATGATCTGGAAGCGGCGTTTGCCCTCGATCATCAGGA AATCCGCCTGCGCGCGACCATCGGCATCACTCTGTTTCCCGAGGACGGCGACAGCACCGAGAAACTGCTGCAAAAAGCCGAGCAGACCATGACGCTGGCG AAAACCCGCTCGCGCAACCGTTATCAGTTCTACATCGCCAGCGTCGACACCGAGATGCGTCGCCGTCGGGAACTGGAAAAAGACCTGCGCGACGCCCTGC GGCGGGACCAGTTCTACCTCGTCTATCAACCGCAGATCAGCTACCGCGATCACCGGGTGGTGGGTGTCGAGGCACTGATTCGCTGGCAGCATCCCGAACA CGGTCTGGTGCCGCCGGACCTGTTCATCCCGCTCGCCGAGCAGAACGGCACCATCATCGCCATCGGCGAATGGGTACTGGATCAAGCCTGCAAGCAATTG CGCGAATGGCACGATCAGGGTTTCCCGGATCTGCGCATGGCGGTGAACCTGTCGACCGTGCAACTGCACCACGCCGAATTGCCGCGAGTGGTCAACAACC TGCTGCAGATGTACCGCCTTCCCCCTCGCAGCCTGGAGCTGGAAGTCACCGAAACCGGCCTGATGGAAGACATCAGCACCGCCGCCCAGCATCTGTTGAG CCTGCGCCGCTCCGGCGCATTGATTGCGATCGACGATTTCGGCACGGGTTATTCGTCCTTGAGCTACCTGAAAAGCCTGCCGCTGGACAAGATCAAGATC GACAAGAGCTTCGTGCAGGACCTGCTCGATGACGACGACGATGCCACCATCGTTCGGGCGATCATCCAGCTGGGCAAGAGCCTGGGCATGCAGGTGATTG CCGAAGGCGTGGAAACCGCCGAGCAAGAGGCCTACATCATCTCCGAAGGCTGCCACGAAGGTCAGGGCTACCACTACAGCAAACCGCTGCCGGCACGGGA ATTGAGCGCCTACCTGAAACAGGCGCAGCGCAGTAACGCAGCCATTTTGTAG
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
AGATCAAACAATCGCAGCCTTGTTCCACTCAACAGCTACTACGGGTCCGTGTGCTTGTAGCCGCTGTCGAGTGAAACGGGGCTGCGATGTTTTTTGATCC ACGACACAACGCTTGTACGAATAAGAAATATTTCCAGCTACAACCCTTTACAGATAATGCGAAAGATTTGCATTATGTCGCAGTTTTGCGCACCCGCTGC GCCATACCCCCCTCTCGAAGCAGGATGTTCGCCATGATTCGTATGCCTCTGGCTACCGCCAGTCTGTTGGCCATCGCTATTTCCCTCGCCGGTTGTGGCG AAGGCAAAGACAAGAACGCCGCTACGCCGACGCCGGCCGCCAGCACCGCTGCGGCTCCAGCTGCCGCCCCGGCCGCTACCAGCAAAGTCGACGAAGCCGC CGCCAAAGCCGTTGTCGCGCACTACGCCGACATCGTCTACGCCGTTTACAGCGATGCCGAATCCACCGCGAAAACCCTGCAAACCGCCGTCGACGCCTTC
|
|
| Amino Acid Sequence |
>diguanylate cyclase
MKLELKNSLSVKLLRVVLLSALIVGVVLSCAQIVFDAYKTRQAVANDAQRILDMFRDPSTQAVYSLDREMGMQVIEGLFQDEAVRQASIGHPNEAMLAQK SRELHHSNSRWLTDLILGKERTFTTQLVGRGPYSEYYGDLSITLDTATYGQGFIVNSVIIFISGVLRALAMGLVLYLVYHWLLTKPLSRIIEHLTEINPD RPSEHKIPLLKGHEKNELGIWINTANQLLESIERNTHLRHEAENSLLRMAQYDFLTGLPNRQQLQQQLDKILVDAGKLQRRVAVLVVGLDDFKGINEQFS YQTGDQLLLALADRLRAHSGRLGALARLGGDQFALVQADIEQPYEAAELAQSILDDLEAAFALDHQEIRLRATIGITLFPEDGDSTEKLLQKAEQTMTLA KTRSRNRYQFYIASVDTEMRRRRELEKDLRDALRRDQFYLVYQPQISYRDHRVVGVEALIRWQHPEHGLVPPDLFIPLAEQNGTIIAIGEWVLDQACKQL REWHDQGFPDLRMAVNLSTVQLHHAELPRVVNNLLQMYRLPPRSLELEVTETGLMEDISTAAQHLLSLRRSGALIAIDDFGTGYSSLSYLKSLPLDKIKI DKSFVQDLLDDDDDATIVRAIIQLGKSLGMQVIAEGVETAEQEAYIISEGCHEGQGYHYSKPLPARELSAYLKQAQRSNAAIL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|