Pseudomonas mandelii JR-1, OU5_RS19795
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas mandelii JR-1, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GCACAGGGCGGCCCGCTGATGCACGTCATCGCCGGTAAAGCCGTGTGCTTCAAGGAAGCGCTGGAGCCTGGTTTCAAGGTTTACCAGCAACAAGTGATCG ACAACGCCCAGGCCATGGCCGGCGTGTTTATCAAACGCGGCTACGATGTAGTGTCCGGCGGCACCGATAACCACCTGTTCCTGGTCAGCCTGATCCGTCA GGGCCTCACCGGCAAAGAGGCGGATGCAGCACTCGGTCGCGCCCACATCACCGTCAACAAGAACGCTGTCCCGAACGATCCACAGTCGCCGTTCGTGACC TCCGGCCTGCGCATCGGCACCCCGGCGGTGACCACGCGCGGCTTCAAGGTGACCCAGTGCGTGGAACTGGCCGGCTGGATCTGCGACATCCTCGACAACC TCGGCGACGCCGACGTGGAAGCGAATGTTGCCCAGCAAGTGTCGGCCCTGTGCGCGGACTTCCCGGTTTATCGCTGAGCGCGGTTTTGGAGTAAATGACT
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| DNA Sequence for Gene |
>OU5_RS19795
ATGCAACGCTACTCGGGCTTCGGCCTCTTCAAACACTCCCTCAGCCATCACGAAAACTGGCAGAAAATGTGGCGCACGCCGACCCCTAAAAAGGTCTATG ACGTGGTCATCGTCGGCGGTGGCGGGCATGGTCTCGCCACGGCTTACTACCTGGCCAAAGAGCACGGCATCACCAACGTGGCCGTGGTCGAGAAAGGCTG GCTGGGCGGCGGTAACACCGCGCGCAACACCACCATCGTTCGCTCCAACTACCTGTGGGACGAGTCGGCGCACCTGTACGAACACGCGATGAAATTGTGG GAAGGCCTGTCCCAGGATCTGAACTACAACGTCATGTTCTCCCAGCGCGGCGTTTACAACCTGTGCCACACCCTGCAAGACATCCGTGATTCCGAGCGTC GGGTCAGCGCCAACCGCCTCAACGGCGTCGACGGCGAACTGCTCGATGCCAAGCAAGTGGCCGACGAGATCCCGTACCTCGACTGCTCGAAGAACACCCG CTACCCGGTAATGGGCGCGACCGTCCAGCGTCGCGGCGGCGTGGCTCGTCACGATGCCGTGGCGTGGGGCTTTGCCCGTGCCGCTGACGCACTGGGCGTG GACCTGATCCAGCAGACCGAAGTGATCGGCTTCCGCAAGGAAAACGGCGTATGCATCGGCGTTGAAACCAACAAAGGCTTCATCGGCGCCAAGCGCGTCG GCGTGGTGACCGCCGGTAACTCCGGGCACATGGCCAAGCTGGCCGGTTTCCGCCTGCCGATCGAATCCCACCCGCTGCAAGCGCTGGTGTCCGAGCCGAT CAAACCGATTATCGACAGTGTGATCATGTCCAACGCCGTACACGGTTATATCAGCCAGTCCGACAAGGGCGACCTGGTGATCGGCGCCGGTATCGACGGC TACAACGGCTACGGCCAGCGTGGTTCGTACCCGGTGATCGAGCACACCATCCAGGCCATCGTCGAGATGTTCCCGGTGTTGTCCCGCGTGCGCATGAACC GGCAGTGGGGCGGCATCGTCGACACCACACCGGATGCGTGCCCGATCATTTCGAAAACCCCGGTCCCGAACATGTTCTTCAACTGCGGTTGGGGCACCGG CGGCTTCAAGGCCACACCTGGCTCGGGCAACGTGTTTGCCGCGAGTCTGGCCAAGGGTGAAATGCACCCATTGGCCGCACCTTTCTCCATCGACCGTTTC CACAACGGTGCGTTGATCGATGAACACGGCGCTGCTGCGGTTGCCCACTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CAGGAGAAATCCCCATGTTGCATATCTTCTGTCCTCACTGCGGCGAGTTGCGCTCCGAAGAGGAATTCCACGCATCCGGCCAGGCGCACATTCCGCGCCC ACTGGATCCGAACACCTGCACCGACGAGGAGTGGGGCGACTACATGTTCTTCCGCGATAACCCTCGCGGTCTGCACCACGAGCTGTGGGATCACGTCGCC GGTTGCCGTCAGTATTTCAACGCGACCCGCGACACCGTGACCTACGAGATTCTCGAGACCTACAAGATCGGCGCCAAGCCGCAGTTCACCGACAAGACCG ATAGCCCGAAAGCGGCCACGACGGCTCTGGGAGAGAAGGTATGAGCCAGATCAATCGCCTGTCCAACGGCGGACGGATCGACCGCAACAAAGTGCTGAGC TTCACCTTCAACGGTCAGGTCTATAAAGGCTTTGAAGGCGATTCGCTGGCCGCTGCCCTGCTGGCCAACGGTGTCGACATCATCGGTCGCAGCTTCAAGT
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| Amino Acid Sequence |
>sarcosine oxidase subunit beta
MQRYSGFGLFKHSLSHHENWQKMWRTPTPKKVYDVVIVGGGGHGLATAYYLAKEHGITNVAVVEKGWLGGGNTARNTTIVRSNYLWDESAHLYEHAMKLW EGLSQDLNYNVMFSQRGVYNLCHTLQDIRDSERRVSANRLNGVDGELLDAKQVADEIPYLDCSKNTRYPVMGATVQRRGGVARHDAVAWGFARAADALGV DLIQQTEVIGFRKENGVCIGVETNKGFIGAKRVGVVTAGNSGHMAKLAGFRLPIESHPLQALVSEPIKPIIDSVIMSNAVHGYISQSDKGDLVIGAGIDG YNGYGQRGSYPVIEHTIQAIVEMFPVLSRVRMNRQWGGIVDTTPDACPIISKTPVPNMFFNCGWGTGGFKATPGSGNVFAASLAKGEMHPLAAPFSIDRF HNGALIDEHGAAAVAH
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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