Pseudomonas mandelii JR-1, OU5_RS18020
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas mandelii JR-1, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TTGCTCGGCTAAACAGCCCTTCCCAAAACCGCTGCAAGGGCTTTACATTGGCACTTGCAGCGCGTTGAAGGGCTTGGTCAAAAAATCAGCGCTTCCCTAA TCGCTGGTGATTTTTTAAACTGTTCAGTCCGCTCGCCCACCCGGGCAGCGCGCATATTGCATTCGCTCCGAGGAATACCATGGCCCGCGTAACCGTTGAA GACTGCCTGAACCACGTGGAAAACCGTTTTGAACTGGTCATGCTGTCCACCAAGCGTGCCCGTCAACTGGCCACCGGCGGCAAAGAGCCACTGGTCCAGT GGGAAAACGACAAGCCTACCGTTGTAGCCTTGCGTGAAATCGCCGAAGGCCTGATGAGCTACGAGTTCATCGCCAATGCTGAAATCGTCGAAGACGAACC GCTGTTCGCAGCGTTCGAGGACGAGTCCAACGAGGCCGTCTAAGCCTATGCCTGGTCGACGTAGCACGGCGCGGGGTCACAGCGAACGGCAGGAGTCATC
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| DNA Sequence for Gene |
>OU5_RS18020
ATGCCGAGCATAGACGCCCTCGCCGATCGCTTATCGACCTACCTCGGCAAGGACCAGGTCAACCTGGTCCGCCGAGCGTACTTCTACGCCGAACAAGCCC ACGACGGCCAACGCCGCCGCAGCGGTGAGGCGTACGTCACGCATCCTCTTGCGGTGGCGAATATTCTTGCCGACATGCACATGGACCATCAGAGCCTGAT GGCGGCGATGCTGCATGACGTGATCGAAGACACCGGTATTGCCAAGGAAGCGCTGCAAGCGCAGTTCGGCGAAACCGTGGCCGAACTGGTAGACGGGGTC AGCAAACTGACTCAGATGAACTTCGAGACCAAGGCCGAAGCACAAGCCGAAAACTTCCAGAAAATGGCCATGGCCATGGCGCGCGACATTCGCGTGATCC TGGTCAAGCTCGCCGACCGCCTGCACAACATGCGCACGCTTGAAGTCCTGTCCGGTGAAAAGCGTCGGCGGATCGCCAAGGAAACCCTGGAAATCTATGC GCCCATCGCCAACCGGCTGGGCATGCACGCCATCCGCATAGAATTCGAAGACCTCGGCTTCAAGGCCATGCACCCGATGCGTTCCGCACGGATCAACCAG GCCGTCAAACGCGCCCGGGGCAACCGCAAGGAAATCGTCAACAAGATCGAAGAATCCCTCAGCCACTGCCTGGCCATCGATGGCATCCAGGGCGAGGTCA GCGGTCGTCAGAAACACCTCTACGGCATCTACAAGAAAATGCGCGGCAAGCGTCGGGCCTTCAACGAGATCATGGACGTCTATGCGTTCCGGATCATCGT CGACAAGGTCGATACCTGCTACCGCGTGCTAGGTGCTGTGCATAATTTGTACAAACCGTTGCCGGGACGCTTCAAGGATTACATCGCGATTCCCAAGGCC AACGGCTACCAGTCGCTGCACACCACGCTGTTCGGCATGCACGGTGTTCCGATCGAGATCCAGATCCGCACCCGTGAAATGGAAGAGATGGCCAACAACG GCATCGCCGCCCATTGGCTGTACAAATCCAGCGGCGACGAGCAGCCAAAAGGCACTCACGCCCGCGCCCGCCAGTGGGTCAAAGGCGTGCTGGAAATGCA GCAACGGGCCGGCAACTCGCTGGAATTCATCGAAAGCGTGAAGATCGACCTGTTCCCGGACGAGGTCTACGTGTTCACGCCCAAAGGCCGGATCATGGAG CTGCCCAAAGGCTCCACTGCGGTCGACTTCGCTTACGCGGTGCACACCGACGTGGGCAACAGCTGCATCGCCTGCCGGATCAATCGTCGTCTCGCACCGC TGTCCGAACCGCTGCAAAGCGGCTCCACGGTCGAGATCGTCAGTGCTCCCGGTGCCCGGCCGAACCCGGCGTGGCTCAACTTCGTGGTCACGGGCAAGGC ACGGACCCACATCCGCCATGCACTGAAACTGCAACGCCGTTCCGAGTCCATCAGCCTGGGCGAGCGCCTGCTGAACAAAGTGCTCAATGGTTTCGACAGC TCGCTGGAAAAAGTACCGGCCGACCGCGTCAAGGCGATGCTCGCCGAATACCGTCTCGAACTGATCGAAGACTTGCTGGAAGACATCGGCCTGGGCAATC GAATGGCCTATGTAGTCGCCCGCCGCCTGCTTGGCGAAGGCGAACAGCTGCCAAGTCCGGAAGGCCCGCTGGCGATTCGCGGCACCGAAGGCCTGGTGCT GAGCTACGCCAAGTGCTGCACGCCGATCCCGGGCGACCCGATTGTTGGTCACTTGTCCGCCGGCAAAGGCATGGTCGTGCACCTGGACAACTGCCGCAAC ATCAGCGAAATCCGTCACAACCCGGAAAAATGCATCCAGCTCTCTTGGGCCAAGGATGTCACCGGCGAATTCAACGTCGAGCTGCGCGTCGAACTGGAAC ATCAGCGCGGCCTGATCGCCCTGCTGGCCAGCAGCGTCAACGCAGCCGACGGCAATATCGAGAAAATCAGCATGGACGAACGCGATGGTCGCATCAGCGT GGTCCAACTGGTGGTCAGCGTGCACGACCGCGTACACCTGGCCCGCGTGATCAAGAAACTGCGTGCATTGACCGGGGTGATCCGCATCACCCGCATGCGC GCCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCCACTATTACAAGGAGTCATTCATGACCAAGACTGTTATCACCAGCGACAAGGCCCCGGCTGCCATCGGTACTTACTCCCAGGCGATCAAGGCTGGCA ACACCGTCTACATGTCGGGCCAGATTCCTCTGGACCCAAAAACCATGGAACTGGTTGAAGGCTTCGAAGCCCAGACCGTCCAGGTGTTCGAGAACCTCAA AGCCGTGGCCGAAGCCGCTGGCGGTTCGTTCAAGGACATCGTCAAACTGAACATCTTCCTCACCGACCTGAGCCACTTCGCCAAGGTCAACGAGATCATG GGCAAGTACTTTGACCAGCCATACCCTGCCCGCGCCGCCATCGGCGTAGCCGCCCTGCCAAAGGGTTCGCAGGTTGAAATGGATGCCATTCTGGTCATCG AGTAATACATCCGGCGCAGCCTTTTCAAGGTTGCGTCGACTTCGTTTCTGAAAGGATTCCACCATGCGCCATGCGCTAGCTCTCTCGCTGGTCGCCCTAC
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| Amino Acid Sequence |
>bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase
MPSIDALADRLSTYLGKDQVNLVRRAYFYAEQAHDGQRRRSGEAYVTHPLAVANILADMHMDHQSLMAAMLHDVIEDTGIAKEALQAQFGETVAELVDGV SKLTQMNFETKAEAQAENFQKMAMAMARDIRVILVKLADRLHNMRTLEVLSGEKRRRIAKETLEIYAPIANRLGMHAIRIEFEDLGFKAMHPMRSARINQ AVKRARGNRKEIVNKIEESLSHCLAIDGIQGEVSGRQKHLYGIYKKMRGKRRAFNEIMDVYAFRIIVDKVDTCYRVLGAVHNLYKPLPGRFKDYIAIPKA NGYQSLHTTLFGMHGVPIEIQIRTREMEEMANNGIAAHWLYKSSGDEQPKGTHARARQWVKGVLEMQQRAGNSLEFIESVKIDLFPDEVYVFTPKGRIME LPKGSTAVDFAYAVHTDVGNSCIACRINRRLAPLSEPLQSGSTVEIVSAPGARPNPAWLNFVVTGKARTHIRHALKLQRRSESISLGERLLNKVLNGFDS SLEKVPADRVKAMLAEYRLELIEDLLEDIGLGNRMAYVVARRLLGEGEQLPSPEGPLAIRGTEGLVLSYAKCCTPIPGDPIVGHLSAGKGMVVHLDNCRN ISEIRHNPEKCIQLSWAKDVTGEFNVELRVELEHQRGLIALLASSVNAADGNIEKISMDERDGRISVVQLVVSVHDRVHLARVIKKLRALTGVIRITRMR A
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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