Pseudomonas mandelii JR-1, OU5_RS10735
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas mandelii JR-1, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CTGGCGACACGGCAGCGGCGGTCAAGCTGACGCTCGAAGACGGCAGCCAGTACAAACAGGAAGGCAAGCTCGAATTCTCCGAAGTTTCGGTTGACCAGAC CACCGGCTCCGTGACCTTGCGTGCAGTGTTCCCGAACCCGGATCACACGCTGCTTCCGGGCATGTTCGTACACGCTCAGCTCAAATCCGGTGTGAACGCC GCTGCCATTCTGGCGCCGCAACAAGGCGTAACCCGCGACCTCAAAGGCTCGCCGACCGCACTGGTCGTCGGTGCGGACAACAAGGTCGAACTGCGTCAGC TCAAGGCCAGCCGCACCGTCGGCAACCAATGGCTGATCGAAGACGGCCTGAAGGCCGGCGATCGTCTGATCACCGAAGGACTGCAATTCGTCAAACCTGG CGTCGAAGTCAAAGCCAGTGAAGCGACTAACGTTGGCGCAAAGAACCCGGCCCCCGCACAGGCAGCTGACAAGGCTTCCAGCGGCAAAGGGGAGTAAACC
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| DNA Sequence for Gene |
>OU5_RS10735
ATGTCGAAATTTTTTATCGACCGTCCGATTTTCGCTTGGGTAATTGCCCTGGTGATCATGCTGGTCGGGGCACTCTCGATTCTCAAACTTCCGATCAACC AATACCCGAGCATTGCGCCTCCGGCCATTGCGATCCAGGTCACCTACCCAGGCGCGTCCGCACAAACCGTGCAGGACACCGTGGTGCAGGTCATCGAACA ACAGCTCAACGGTATCGATAACCTGCGTTATGTCTCCTCGGAAAGTAACTCCGACGGCAGCATGACCATTACCGCGACCTTCGAGCAGGGCACCAACTCC GATACCGCGCAGGTTCAGGTCCAGAACAAACTGAACCTGGCCACCCCGCTGCTGCCGCAAGAAGTGCAGCAACAGGGTATCCGCGTGACCAAGGCAGTGA AAAACTTCCTGTTGGTGATCGGCGTGGTATCTCGCGACGGCAGCATGACCAAGGACGACCTGTCCAACTACATCGTGTCGAACATGCAGGACCCGATCTC GCGGACCGCCGGTGTCGGTGACTTCCAGGTCTTCGGTTCCCAGTACGCGATGCGTGTCTGGCTCGACCCTGCCAAGCTGAACAACTTCAACCTGACGCCA GTGGACGTGAAAGCGGCCATCGCGGCGCAGAACATCCAGGTGTCCTCCGGTCAACTGGGCGGCCTGCCTGCTGCGCCCGGCCAGCAGTTGAACGCCACCA TCATCGGCAAGACACGTCTGCAGACTGCCGAGCAGTTCAACAAGATCCTGCTCAAAGTCAACAAGGACGGCTCGCAAGTACGCCTGTCCGATGTGGCCGA TGTAGGCCTGGGCGGTGAAAACTACAGCATCAACGCCCAGTTCAACGGCGCACCGGCTTCCGGTCTGGCGGTGAAACTGGCCAACGGTGCCAACGCCCTC GACACCGCGAAAGCGCTGCGCAACACCATCAACACGCTCAAGCCGTTCTTCCCGCAAGGCATGGAAGTGGTGTTCCCGTACGACACCACCCCGGTGGTGA CCGAGTCGATCAAGGGTGTGGTTGAAACCCTGGTCGAAGCGATCGTGCTGGTGTTCCTGGTGATGTTCCTGTTCCTGCAGAATTTCCGCGCCACTGTCAT CACCACGATGACCGTGCCGGTGGTGTTGCTGGGGACATTCGGGATCCTCGCGGCGTTCGGTTTCAGCATCAACACCCTGACCATGTTCGGCATGGTGCTG GCCATCGGCTTGCTGGTGGACGATGCCATTGTCGTGGTGGAAAACGTCGAACGGGTCATGAGCGAAGAAGGTCTGTCACCCAAGGAGGCCACCAAGAAAT CCATGGGGCAGATCCAGGGTGCACTGGTCGGTATCGCCCTGGTGCTGTCGGCGGTATTGCTGCCGATGGCGTTCTTCAGTGGCTCTACCGGTGTGATCTA CAAGCAATTCTCGATCACCATCGTCTCGGCCATGGCCCTGTCGGTACTGGTTGCGCTGATCTTCACCCCGGCACTGTGCGCCACCATGCTCAAGGCAATT CCGAAAGGCGAGCACGGCACGCCGAAACGCGGCTTCTTCGGCTGGTTCAACCGCAGCTTTGACCGTGGCGTCAAAAGCTACGAGCGTGGCGTGGGCAACA TGCTGACGCACAAGGCGCCGTACCTGCTGGCCTACTTGATCATTGTCGTCGGCATGATCTGGCTGTTCACCCGCATTCCAACGGCGTTCCTCCCGGAAGA AGACCAAGGCGTGCTGTTTGCCCAGGTGCAGACCCCGGCCGGCTCCAGCGCCGAACGCACGCAGGTGGTGATCGATGAGATGCGCTCCTACCTGCTGGAC AAGGAATCGAGCGCCGTGGCCTCGGTGTTTACCGTCAACGGCTTCAACTTCGCCGGTCGCGGCCAAAGCTCGGGCCTGGCGTTCATCATGCTCAAGCCGT GGGATCAGCGGGATGCGGAAAACAGCGTGTTCAAACTCGCCGCCCGCGCCCAGCAGCACTTCTTCACCTTCCGCGATGCGATGGTGTTCGCCTTTGCGCC ACCGGCGGTATTGGAGCTGGGTAACGCCACCGGTTTCGACGTATTCCTGCAAGACCGCGCCGGCATCGGTCACGACAAGTTGATGGAGGCTCGCAACCAG TTCCTCGGCATGGCGGCACAGAGCAAGGTGCTTTATCAGGTGCGTCCGAACGGCCTGAACGACGAGCCGCAATACCAGCTGGAAATCGATGACGAGAAAG CCAGTGCATTGGGCCTGACCCTCACCGACATCAACAGCACCCTGTCGATTGCCTTGGGTAGTAGCTACGTCAACGACTTCATCGACCGTGGTCGGGTGAA GAAGGTCTACGTGCAAGGTCAACCCGGTTCGCGGATGAGCCCGGAAGACATCAAGAAATGGTATGTGCGCAACGCCGCCGGAACCATGGTGCCCTTCTCC GCCTTCGCCAAGGGCGAGTGGATTTACGGTGCACCGAAGCTCTCGCGTTACAACGGCGTAGAAGCGATGGAAATTCTCGGTGCCCCGGCCCCGGGCTATT CCACCGGTGAAGCCATGGCTGAAGTCGAAGCCCTGGCCAAGAAACTGCCGGCCGGTGTCGGTATTTCCTGGACCGGTCTGTCATACGAAGAACGGCTATC GGGCTCACAGGCGCCGGCGCTGTATGCGTTGTCGCTGCTGATGGTGTTCCTGTGCCTGGCGGCGCTGTACGAAAGCTGGTCGATTCCGATCGCGGTGATG CTGGTGGTGCCGCTGGGGATCATCGGGGCACTGTTGGCCACCAGTCTGCGGGGACTCTCCAATGACGTTTACTTCCAGGTGGGCCTGTTGACAACCATCG GTCTGGCAGCGAAAAACGCCATTCTGATCGTCGAGTTCGCCAAGGAACTGCATGAGCAAGGGCGTAGCCTTCGCGAAGCGGCGATTGAAGCGTGCCGAAT GCGTTTGCGACCGATCATCATGACCTCGCTGGCCTTCGTGCTCGGTGTGGTACCGCTGGCGATTTCCACGGGCGCCGGTTCAGGTAGCCAGCACGCAATC GGCACGGGCGTTATTGGCGGTATGATCACCGCCACCGTCCTGGCGATCTTCTGGGTCCCACTGTTCTTCGTTACCGTGTCGTCCATTGGCCAGCGCAAAA AAGCCGACCAGGATGACGCAATTGAACCTTCTAAAGAGGCTGGCCAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCAAGTCGCTACTCTCCATCGCAGTTGCCGCCTTCGTGCTGAGCGGCTGCTCGCTGATTCCCGACTATCAGCAACCTGAGGCACCAGTGGCGGGCCAATA CCCGCAAGGTCCGGCGTACTCGTCGGCCCAGGCGCCGAATCAGGCCGCTGCGGAACAGGGCTGGAAGCAGTTTTTCCATGACCCGGCACTGCAACAGCTG ATTCAGGTGTCGCTGGAAAACAACCGTGACCTGCGTGTCGCCGCCCTGAACATCGACGCGTTCGCGGCTCAATACCGCATCCAGCGCGCCGATCTGTTCC CGGCCGTTTCGGCCAATGGCACCGGCAGCCGTCAGCGTCTTCCGGCTGACGCGTCGCAGACCGGTCAAGCGGGCATCAGCAGTTCCTACTCCGCTACGGT CGGTATCAGTGCTTATGAACTCGACCTGTTCGGTCGGGTTCGCAGCCTCAGCGAAGAAGCCCTTCAGAAGTACTTCGCGACAGAAGAAGGCCGTCGCAGC
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| Amino Acid Sequence |
>multidrug efflux RND transporter permease subunit
MSKFFIDRPIFAWVIALVIMLVGALSILKLPINQYPSIAPPAIAIQVTYPGASAQTVQDTVVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFEQGTNS DTAQVQVQNKLNLATPLLPQEVQQQGIRVTKAVKNFLLVIGVVSRDGSMTKDDLSNYIVSNMQDPISRTAGVGDFQVFGSQYAMRVWLDPAKLNNFNLTP VDVKAAIAAQNIQVSSGQLGGLPAAPGQQLNATIIGKTRLQTAEQFNKILLKVNKDGSQVRLSDVADVGLGGENYSINAQFNGAPASGLAVKLANGANAL DTAKALRNTINTLKPFFPQGMEVVFPYDTTPVVTESIKGVVETLVEAIVLVFLVMFLFLQNFRATVITTMTVPVVLLGTFGILAAFGFSINTLTMFGMVL AIGLLVDDAIVVVENVERVMSEEGLSPKEATKKSMGQIQGALVGIALVLSAVLLPMAFFSGSTGVIYKQFSITIVSAMALSVLVALIFTPALCATMLKAI PKGEHGTPKRGFFGWFNRSFDRGVKSYERGVGNMLTHKAPYLLAYLIIVVGMIWLFTRIPTAFLPEEDQGVLFAQVQTPAGSSAERTQVVIDEMRSYLLD KESSAVASVFTVNGFNFAGRGQSSGLAFIMLKPWDQRDAENSVFKLAARAQQHFFTFRDAMVFAFAPPAVLELGNATGFDVFLQDRAGIGHDKLMEARNQ FLGMAAQSKVLYQVRPNGLNDEPQYQLEIDDEKASALGLTLTDINSTLSIALGSSYVNDFIDRGRVKKVYVQGQPGSRMSPEDIKKWYVRNAAGTMVPFS AFAKGEWIYGAPKLSRYNGVEAMEILGAPAPGYSTGEAMAEVEALAKKLPAGVGISWTGLSYEERLSGSQAPALYALSLLMVFLCLAALYESWSIPIAVM LVVPLGIIGALLATSLRGLSNDVYFQVGLLTTIGLAAKNAILIVEFAKELHEQGRSLREAAIEACRMRLRPIIMTSLAFVLGVVPLAISTGAGSGSQHAI GTGVIGGMITATVLAIFWVPLFFVTVSSIGQRKKADQDDAIEPSKEAGQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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