Pseudomonas mandelii JR-1, OU5_RS01640
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas mandelii JR-1, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TCGACAACCAGGTCAACCCGAAAACCGGCACCATCCGCGGTCGCGCGGTCTTTGATAATGCTGACGGACAGTACACCCCAGGCTTGTATGCCCGTTTGAA ACTGGTCGGCAGCGGCACTTACTCCGCCGTGCTGATCAACGACGAAGCGGTCGGAACCGATCTGGGCAAGAAATTCGTGCTGGTGATGGATGCCGACAAC AAGACGGCCTATCGCTCCGTCGAACTGGGGCCGAAGATCGAAGGCTTGCGCATCGTGCGCAGCGGCCTGAACAAGGATGACACCGTCATCGTCAAGGGGC TGCAACGGGTTCGCCCTGGCTCGCCGGTCACCCCTGAAGTGATCCCGATGGCCAGCGAACAAACCCTCGCGGCACTCGCACAACAACGACAAGCGCTGGA AGCCAGCAACCTGCCCCAAGTCGCACCTGCCAAGGTCGCGCCGGGTACGGTTGTGAAACTGGCTGCTGCGACTCCACGCGGTTAAGGGACGACAACTCCG
|
|
| DNA Sequence for Gene |
>OU5_RS01640
ATGAATTTTTCCCAATTCTTCATTTCACGGCCGATCTTCGCAGCGGTGCTTTCGCTGCTGATCCTGATCGCCGGTGCCATCTCGCTGTTCCAGTTGCCGA TCAGCGAATACCCGGAAGTCGTGCCACCGACCGTTGTGGTCCGTGCGAACTTCCCCGGCGCCAACCCAAAAGTCATCGGTGAAACCGTGGCCGCTCCCTT GGAGCAAGCCATTACCGGTGTCGAGAACATGCTGTACATGTCCTCGCAGTCCACCGCTGACGGCAAGATTACCCTGACCATCACCTTCGCACTGGGCACT GACCTGGACAATGCACAGGTGCAGGTTCAAAACCGCGTGACCCGGACCGAGCCGAAACTTCCAGAAGAAGTGACGCGCATCGGTATCACCGTCGACAAGG CGTCGCCCGACCTGACCATGGTTGTGCACTTGACCTCGCCGGACAAACGCTACGACATGCTCTACCTGTCCAACTACGCCTTGCTCAACATCAAGGATGA GCTGGCGCGCCTGGGCGGTGTCGGTGACGTGCAACTGTTCGGTATGGGCGACTACTCGCTGCGGGTCTGGCTCGATCCGAACAAGACCGCTTCGCGCAAC CTGACTGCCACCGATGTGGTAACCGCGATTCGTGAACAGAACCGTCAAGTCGCTGCCGGTGCACTGGGTGCGCCCCCTGCGCCGAATGCCACTGCGTTCC AGCTGTCGGTCAACACTCAGGGCCGTCTGGTTTCTGAAGAAGAGTTCGAGAACATCATCATTCGCTCCGGCGACAACGGTGAAATCACGCGCCTGAAAGA CATCGCTCGCGTTGAGCTGGGCTCCAGCCAATACGCATTGCGCTCGCTGCTGAACAACCAGCCTGCGGTGGCGATCCCGATCTTCCAGCGCCCTGGCTCC AACGCGATCGAGATCTCCAACGAAGTTCGCGACAAGATGGCCGAACTGAAGAAAAACTTCCCGGAAGGCATGGACTTCAGCATCGTCTATGACCCGACGA TCTTCGTGCGCGGCTCCATCGAGGCGGTGGTCCACACCCTCTTCGAAGCGCTGATTCTCGTGGTTCTGGTGGTGATCCTGTTCCTGCAAACCTGGCGCGC TTCGATCATTCCGTTGGTGGCGGTGCCGGTTTCGCTGATCGGTACGTTTGCGGTGATGCACCTGTTCGGCTTCTCGCTGAATGCCCTGTCACTGTTCGGC CTGGTATTGGCCATCGGTATCGTGGTGGACGACGCCATCGTGGTGGTGGAGAACGTGGAAAGGCACATCGAGCTGGGAGAAACGCCCGTAGAAGCCACCA AGAAAGCCATGCGTGAGGTGACCGGGCCGATCATCGCGACGGCGCTGGTGCTGTGTGCGGTATTTATTCCGGCGGCGTTCATTTCGGGACTCACCGGCCA GTTCTATAAACAGTTTGCCCTGACCATTGCCATCTCGACCGTGATCTCGGCGTTCAACTCGCTGACACTGTCCCCTGCCCTGGCCGCCGTGCTGCTCAAG AGCCACCATGCGCCGAAAGATCGCTTTACCAAAGTGCTTGATAAACTGTTGGGCGGCTGGCTTTTCCGTCCGTTCAACCGGTTCTTCGAACGCGCCAGCC ATGGTTATGTCGGCACCGTAGCCCGGGTTATCCGCAGCAGCGGTATTGCCCTGCTGTTGTACGCAGGCCTGATGGTGCTGACCTTCTTCGGTTTCGCCCA CACCCCGACCGGCTTCGTACCCGGCCAGGACAAGCAATACCTGGTGGCCTTCGCGCAACTGCCGGACGCTTCGAGCCTTGACCGCACCGAGGACGTGATC AAACGCATGTCCGACCTGGCCCTGAAACAGCCTGGCGTGGAAAGTGCGGTAGCGTTCCCGGGCCTGTCGATCAACGGTTTCACCAACAGCCCGAATGCCG GCATCGTGTTCGTGACCCTGAAACCGTTCGACGAGCGCAAAGACCCGAGCATGTCGGCCGGTGCGATTGCCGGTGCATTGAACGGCCAGTTCGCCGGAAT CCAGGAAGCCTACATGGCGATCTTCCCGCCGCCGCCGGTACAAGGCCTGGGCACCATCGGCGGTTTCCGCCTGCAGATCGAAGACCGGGGCAACCTGGGC TACGACGAGCTGTACAAAGAAACCATGAACATCATCACCAAGAGCCACAACGTGCCGGAACTGGCCGCGCTGTTCACCAGCTACACCGTGAACGTGCCGC AGGTCGATGCCGCCATCGACCGTGAAAAAGCCAAGACCCACGGCGTGGCCGTCAGCGACATCTTCGACACCCTGCAGATCTACCTGGGTTCGCTGTATGC CAACGACTTCAACCGCTTCGGTCGCACCTATCAGGTCAACGTCCAGGCTGAACAGCAGTTCCGTCTCGAACCGGACCAGATCGGTCAGCTGAAAGTGCGT AACAACAAAGGCGAGATGATCCCGCTGGCGACCTTCATCAAGGTCAGCGACACCTCGGGCCCGGACCGCGTGATGCACTACAACGGCTTCATCACCGCTG AAATCAACGGTGCCGCAGCCCCAGGCTACAGCTCCGGCCAGGCTCAGGCAGCGATCGAGAAACTGCTCAAGGAAGAACTTCCAAACGGCATGACCTACGA GTGGACCGACCTGACCTACCAGCAGATTCTGTCCGGCAACACCGCGCTGTTCGTGTTCCCGCTCTGCGTATTGCTGGCGTTCCTGGTGCTCGCGGCCCAA TACGAAAGCTGGAGCCTGCCACTGGCGGTGATCCTGATCGTACCGATGACCCTGCTGTCGGCCATCATCGGTGTGATTGCTTCGGGAGGCGACAACAACA TCTTCACCCAGATCGGCTTGATCGTACTGGTGGGACTTGCGTGTAAGAACGCGATTCTGATCGTCGAGTTTGCCAAGGATAAACAGCAGGACGAAGGTCT CAGCCCGCTGGCTGCGGTCCTGGAAGCATGCCGTCTGCGTCTGCGTCCGATCTTGATGACTTCCTTCGCGTTCATCATGGGTGTTGTGCCTCTGGTCTTC TCCAGCGGTGCCGGTGCCGAAATGCGTCATGCCATGGGTGTGGCGGTGTTCTCCGGGATGCTCGGGGTGACCTTCTTCGGTCTGTTGCTGACACCCGTGT TCTACGTATTGATTCGTAACTTTGTGGAGCGCGGTGAAAAGCGCAAAGCGGCCAAGGTCCTGAAACTGGAGGCGCAACAATGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GCCTTAAAGCCTTCCTGCCGAGCCTTCTGGTACTGGCCTTGAGTGCCTGTGCCGTCGGCCCGGACTACAAGACACCCGCCACTGAGCCGGCCAACATCAC CACTGCCACCGACGGCGCTGCCGGCCAGAAAAACTTCGACCGCTCGCGTTTCGAAGGCATCTGGTGGCAGCAGTTCGAAGACCCGACCCTCAACCAGTTG GTGACTCAATCGCTGCAAGGCAACCGTGATCTGCGCGTGGCCTTCGCCCGCTGGAAAGCGGCCCGGGCGATTCGCGATGACGTCAGCAATGACGCCATGC CCACCATCACCAGCCGCGCCAGCAGTGACTTGGGCAAGGGTCAGATCCCGGGCCAGACCACCAAACGGGTCAACAGCGAACGTTACGACCTTGGCCTGGA CATGGCGTGGGAGATCGACCTGTTTGGGCGTATCCAGCGCAACCTCGAGTCCGCCGATGCCGAACAGCAGGCGCTCGAAGCCGATCTGTACCAACTGCAA
|
|
| Amino Acid Sequence |
>multidrug efflux RND transporter permease subunit
MNFSQFFISRPIFAAVLSLLILIAGAISLFQLPISEYPEVVPPTVVVRANFPGANPKVIGETVAAPLEQAITGVENMLYMSSQSTADGKITLTITFALGT DLDNAQVQVQNRVTRTEPKLPEEVTRIGITVDKASPDLTMVVHLTSPDKRYDMLYLSNYALLNIKDELARLGGVGDVQLFGMGDYSLRVWLDPNKTASRN LTATDVVTAIREQNRQVAAGALGAPPAPNATAFQLSVNTQGRLVSEEEFENIIIRSGDNGEITRLKDIARVELGSSQYALRSLLNNQPAVAIPIFQRPGS NAIEISNEVRDKMAELKKNFPEGMDFSIVYDPTIFVRGSIEAVVHTLFEALILVVLVVILFLQTWRASIIPLVAVPVSLIGTFAVMHLFGFSLNALSLFG LVLAIGIVVDDAIVVVENVERHIELGETPVEATKKAMREVTGPIIATALVLCAVFIPAAFISGLTGQFYKQFALTIAISTVISAFNSLTLSPALAAVLLK SHHAPKDRFTKVLDKLLGGWLFRPFNRFFERASHGYVGTVARVIRSSGIALLLYAGLMVLTFFGFAHTPTGFVPGQDKQYLVAFAQLPDASSLDRTEDVI KRMSDLALKQPGVESAVAFPGLSINGFTNSPNAGIVFVTLKPFDERKDPSMSAGAIAGALNGQFAGIQEAYMAIFPPPPVQGLGTIGGFRLQIEDRGNLG YDELYKETMNIITKSHNVPELAALFTSYTVNVPQVDAAIDREKAKTHGVAVSDIFDTLQIYLGSLYANDFNRFGRTYQVNVQAEQQFRLEPDQIGQLKVR NNKGEMIPLATFIKVSDTSGPDRVMHYNGFITAEINGAAAPGYSSGQAQAAIEKLLKEELPNGMTYEWTDLTYQQILSGNTALFVFPLCVLLAFLVLAAQ YESWSLPLAVILIVPMTLLSAIIGVIASGGDNNIFTQIGLIVLVGLACKNAILIVEFAKDKQQDEGLSPLAAVLEACRLRLRPILMTSFAFIMGVVPLVF SSGAGAEMRHAMGVAVFSGMLGVTFFGLLLTPVFYVLIRNFVERGEKRKAAKVLKLEAQQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|