Pseudomonas mosselii SJ10, O165_RS24830
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas mosselii SJ10, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CAAGACTGATCGCAGCCCTGGCCATGGTGCTGCTCAGTGCCTGCAGCAAGGACACGCCGAGCGAGCCTGCCCCCGAGGCGGCGCCCGCCACGGGCGTCAC CCTGTACTTCAGCGCCGCCGCCGGGCTCAACCCCGGTGCCAGCGGCATGCCCGCGCCGGTACGGGTACGCATCTACGAGCTGAAGAACAGCGCCGCCTTC GCCCGTGCCGACTACTTCGCCCTGGCCGAACGCGCCCAGGCCACTTTGGCCGCCGACCTGATCGACCAGGATGAAGTCCTGCTCCAGCCCGGCGAGCAGC TGCGCCTGGAGCGCCCGCTCGACCCGGCCACGCGCCAGGTCGGCCTGGTGGTCGGTTACCGCGAGGTCGACCGCGCCCAGTGGCGCAGCGTGCTGCCGGT ACCGCCCCGTGACTATCAGATCAGCCTCGATGTGCGCGCCGTGCGCAGCGCCTTGGCCACCCCACAACCTGAGCCTGCCCGCTAGGCAATCGGAGAAAGC
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| DNA Sequence for Gene |
>O165_RS24830
ATGTCCTGGAACAATCGCGTGGTCTGGTCGGAAGGGATGTTCATCACCACCCAGCACTTCCAGCAGCACGACCGCTATCTGGAAAACTTCGTCGATGCCC GCAGCCGGCCGCTCAGCGCCGCCGCCTGGGGCTTTTCCGAACTGCTGATCGATCAGGGCCTGCTGGCCCAGGGCAAGCTGGCGATCCTCAGCGCCCGTGG CCTGCTGCCGGATGGCACGCCGTTCGATATTCCCCGTGACGACCTGCCGCCCGCGCCGCTGGAGATTCCCGACGACCTGCGCAACGGTGTGATCTACCTC GGCCTGCCGCTCAAGCGTGCCGGCGCCCGCGATACCGTGGACGACGGCGAGGTGCCTGACGGTGCGCGTTACGTCAGTCGTGTCAGCGAAGTGCGCGACG ACAATGCCCCGTTCGAAAACCGCGCGCCGCTTGCCCTGGGCAGCCGTGCCCTGCGCCTGCTGCGCGCCGAGGATGGCCTGAGCGACTATGCCGCGTTGGG CGTGGTGCGTATCCGCGAGAAGCGTGCCGACCGCGCACTGGTGCTGGATGACAGCTACATCCCGCCGCTGCTCGATGTGGCCACCAGCAACCAGCTCTCG GGCTTTCGTGGCGAGCTGCTGGGCCTGCTGCACCAGCGCGGCGAAGCCTTGGCCGGGCGCGTGGTCGCCTCGGCCAATGGCGGCGCCTCGGAGATCGCCG ACTTCATGCTGCTGCAACTGGTCAACCGCGCCCAGCCGCTGGTCGAGCACCTCAACCAGCTGACGCCGCTGCACCCCGAGCGGCTGTACAGCGAGCTGGT GGCCCTGGCCGGCGAGTTCGCCACCTTCACCCGCGATGGCCGCCGTCCGGAAAGCTACCCGGTGTACCAGCACGACGACCTGGCGGCGACCTTCGCCCCG GTAATGGCCGCGCTGCGCGAGGCGCTGTCGATGCTGATCGACAGCAAGGCCGTGGCCATCCCGCTGGTCGAGAAGGCCTACGGCATCCATGTCGGCATGC TCGCCGACCGCAGCCTGCTCGACAGCGCCAGCTTCGTGCTGGTGGTGCGCGCCGACGTGCCCAGCGAGACCCTGCGCAGCCGCTTTGGCCAGCAGAGCAA GATCGGCGCGGTGGAGCACATCCGCGACCTGGTCAACCTGCAACTGCCGGGCATCGGCCTGCTGCCGCTGCCGGTGGCGCCACGGCAGATTCCGTTCCAC GCCGGTTCCACCTACTTCGAACTCGACCGGGGCAGCGAACACTGGAAGCAACTGCAGCATTCCGGTGGTTTTGCCTTCTACGTCGCTGGCGAGTTCCCCG GCCTGAACCTGGCCTTCTGGGCCATTCGAGGATAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCGCGATGCAATCGGACGATCCGCTCGCCAACGACCGCACCCAGTTCATGCCGCGCCCCGGTGGCCGTGGCCCGCAACCGGCCGCGCCGGGGCCTGCGC AAGCTGCGCCGCCGCCACCCCTGAACGTGCCGGCCGAACCGCTGGCGCCGGGCCAGGCGGCGGGCCTTAACCCGCTGGAGCAGGCGGCCGGTCCATTGTT GGCGCTGCTCACGCGCCTGCGCAACACCATCGCCCATCCGGCCCCGGCCAGCCTGCGTGCGCAACTGCTGGCCTACCTGCGCCAGTTCGAAGAGCGTGCC GAGGCCGCCGGGGTGCCGCGCAACGAGGTGCTGCTGGCGCGCTATGCCTTGTGCACCGCGCTCGACGAGGCGGTGCTGAGCACGCCCTGGGGCAGCGCCA GTGACTGGGGCAAGCAGAGCCTGCTGATCACCGTGCACAACGAGGCCTGGGGCGGCGAGAAGGTGTTCCAGCTGATGGAGCATTGCCTGCAGAGCCCGCG
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| Amino Acid Sequence |
>type VI secretion protein
MSWNNRVVWSEGMFITTQHFQQHDRYLENFVDARSRPLSAAAWGFSELLIDQGLLAQGKLAILSARGLLPDGTPFDIPRDDLPPAPLEIPDDLRNGVIYL GLPLKRAGARDTVDDGEVPDGARYVSRVSEVRDDNAPFENRAPLALGSRALRLLRAEDGLSDYAALGVVRIREKRADRALVLDDSYIPPLLDVATSNQLS GFRGELLGLLHQRGEALAGRVVASANGGASEIADFMLLQLVNRAQPLVEHLNQLTPLHPERLYSELVALAGEFATFTRDGRRPESYPVYQHDDLAATFAP VMAALREALSMLIDSKAVAIPLVEKAYGIHVGMLADRSLLDSASFVLVVRADVPSETLRSRFGQQSKIGAVEHIRDLVNLQLPGIGLLPLPVAPRQIPFH AGSTYFELDRGSEHWKQLQHSGGFAFYVAGEFPGLNLAFWAIRG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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