Pseudomonas putida S12, RPPX_RS24855

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas putida S12, complete genome. [Details]
DNA Sequence Upstream of Gene
TGCAGACCACTGCCGTTTTGGCGTGTACGCCGGGGTGCCAGCAGCCTGATCGAAACAGGCCAGTCGCTCGACGTTGGACACGATCCGGGGACAGTCCCGC GTGGAGCCTGCCAGCACCGGCTGCAGACAAAACAGCAACGAGAGACCGGCGCCATATGCACAGCGGTTAATCATCCTGAATTTACTCTCCGAAAAGTACT AACGGCCTATATAGAGCAAAGAACTTTCCTACAAATAGATAGCGATACCCATGCACCCGCTCGACCAACTAAAACAATTCCAGCAGAAGCCTATTACACA GCACCTAATGCACACAAACAAATATTTCCTTACATCTTAATGCTCGACCAAAGATCACTCTTGCGTGCATGGTTTTTATAGAAATTGGACAAATAACCCA ACCCATTGAACATATGTGGGAATCTTCCTACAAGACCGAGACAATAATAAACACAACTAGCACATGAACATCCTACAGCCCAACAGGGAGTTGCGTACCG
DNA Sequence for Gene
>RPPX_RS24855
ATGTCTAAAAATACGGGATCCGTTGCGCCGAAAGAACGCGTCAATATCAAGTATGTCCCCGCTACCAGCGATGAGCAGGCTGAGGTGGAGCTGCCGCACA AGATGCTGGTGCTGGGCGACTTCGGCCTGGATGACAACCGGGCGCTTGAGGACCGTCAGGTCATGCGCATCGATAAACATACATTCAACAGCGTGTTGAA CGACGCCAACGTGAGCCTGGACGTAAAGGTACCGTCCAGGCTCGGCACCGCCCCGGATACCGAACTGGCCGTCCACCTGCAGTTCAGGTCCATCAACGAT TTCGGGCCGGACCGGATCGCGCGCCAGGTGCCCGAGCTGAACAAGCTGCTGGCGCTGCGCGAAGCACTGGTCGCCCTGAAAGGCCCGCTGGGTAACGTCC CGGCCTTCCGCAAGCAATTGCAGCACCTGCTTAACAACGAGCAGGCGCGTAAGCAGCTCGCCCAAGAACTGGACCTGGTGCTAGAGGCGCCAGAACAAGA TTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GACAACGGAGCGTCCACATGCCCAAGCCAAGCAGCACCGCCATCACCACAGACGCAACGGCCGACACATTGAGCAATGCCACCTTGCTCGACCAGATCAT GGCAGAAACCAAGCTGGTGCCTGCTCAGGAGGGCTACCAGATTGCCAGGCAGGGCGTATCTGCCTTCATCACCGAAATCCTCAAGAGCAATGACCCGGAT CAACTGATCAACAAGCACCGGGCCGACCAGATGATTGCCGAGATCGACCGAATGCTCGGCAAACAGATGGATGCCATTCTGCATCAGCCTGAGTTCCAGC AGCTTGAATCATCATGGCGCAGCCTGAAACTTCTGGTCGACCGCACGGACTTCAGGGAGAACATCAAGCTTGAAGTCTTGCATGTCACTAAAGAGGACCT GCTCGACGACTTCGAAAATGCTGCTGACATTACCTGCAGCGGTATCTACAAGCATGTTTACACCGCGGGTTATGGCCAATTCGGGGGAGAGCCGGTTGCG
Amino Acid Sequence
>type VI secretion protein
MSKNTGSVAPKERVNIKYVPATSDEQAEVELPHKMLVLGDFGLDDNRALEDRQVMRIDKHTFNSVLNDANVSLDVKVPSRLGTAPDTELAVHLQFRSIND FGPDRIARQVPELNKLLALREALVALKGPLGNVPAFRKQLQHLLNNEQARKQLAQELDLVLEAPEQD
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site